Variant report

Variant	rs13147852
Chromosome Location	chr4:26679708-26679709
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11942145	0.80[ASN][1000 genomes]
rs35662415	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26629200-26680800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr4:26640000-26691400	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:26642400-26697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:26642800-26680000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:26642800-26680800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:26657600-26680600	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:26658400-26679800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:26658400-26679800	Weak transcription	Fetal Intestine Small	intestine
9	chr4:26659600-26687600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:26660000-26680800	Weak transcription	Esophagus	oesophagus
11	chr4:26660200-26679800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:26660200-26680200	Weak transcription	Fetal Brain Male	brain
13	chr4:26660600-26689000	Weak transcription	HMEC	breast
14	chr4:26660800-26691400	Weak transcription	Psoas Muscle	Psoas
15	chr4:26661000-26680400	Weak transcription	Liver	Liver
16	chr4:26662800-26680000	Weak transcription	Fetal Brain Female	brain
17	chr4:26663200-26680600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:26663200-26680600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr4:26663400-26680200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr4:26663400-26680800	Weak transcription	Lung	lung
21	chr4:26663600-26679800	Weak transcription	Primary T cells from cord blood	blood
22	chr4:26663600-26680000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr4:26663600-26680400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr4:26663600-26680400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr4:26663600-26680600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:26663600-26680800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr4:26663600-26684000	Weak transcription	Fetal Kidney	kidney
28	chr4:26663600-26691800	Weak transcription	Right Ventricle	heart
29	chr4:26663800-26680200	Weak transcription	Fetal Intestine Large	intestine
30	chr4:26663800-26691200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr4:26663800-26691400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr4:26663800-26694000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:26664000-26679800	Weak transcription	Primary B cells from cord blood	blood
34	chr4:26664000-26679800	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr4:26664800-26680600	Weak transcription	Ovary	ovary
36	chr4:26665400-26680000	Weak transcription	Fetal Muscle Leg	muscle
37	chr4:26666800-26685800	Weak transcription	Left Ventricle	heart
38	chr4:26666800-26691200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
40	chr4:26673200-26680600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:26674000-26681600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:26674200-26680600	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr4:26676000-26687000	Weak transcription	NHDF-Ad	bronchial
44	chr4:26676200-26680600	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr4:26676200-26681200	Weak transcription	HSMM	muscle
46	chr4:26676800-26685800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr4:26677000-26680000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr4:26677000-26680600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr4:26677200-26680000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr4:26677800-26680600	Strong transcription	Fetal Thymus	thymus

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