Variant report

Variant	rs13149395
Chromosome Location	chr4:90956988-90956989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:90956253..90958836-chr4:91048195..91050862,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184305	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10516857	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10516858	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10516860	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10516862	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1117840	0.80[EUR][1000 genomes]
rs1117841	0.80[EUR][1000 genomes]
rs11933698	0.81[EUR][1000 genomes]
rs11939062	0.80[EUR][1000 genomes]
rs11939159	0.80[EUR][1000 genomes]
rs11941275	0.81[EUR][1000 genomes]
rs12500465	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12639636	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12642395	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12642404	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12643741	0.86[EUR][1000 genomes]
rs12647171	0.86[EUR][1000 genomes]
rs12647266	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12648872	0.87[EUR][1000 genomes]
rs12649987	0.93[EUR][1000 genomes]
rs12650363	0.86[EUR][1000 genomes]
rs12651123	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13106409	0.85[EUR][1000 genomes]
rs13107286	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13108338	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13113863	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13119778	0.85[EUR][1000 genomes]
rs13120745	0.87[EUR][1000 genomes]
rs13121853	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13124133	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13126339	0.86[EUR][1000 genomes]
rs13131070	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13131903	0.88[EUR][1000 genomes]
rs13132515	0.80[EUR][1000 genomes]
rs13132730	0.87[EUR][1000 genomes]
rs13143093	0.81[EUR][1000 genomes]
rs13148977	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13150124	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13151441	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1443796	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1443798	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1443799	0.80[EUR][1000 genomes]
rs1479430	0.80[EUR][1000 genomes]
rs1562034	0.85[EUR][1000 genomes]
rs17204072	0.87[EUR][1000 genomes]
rs17808648	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17808829	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1982293	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2120372	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2120375	0.88[EUR][1000 genomes]
rs34001515	0.87[EUR][1000 genomes]
rs34064092	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34343229	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34886505	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35197902	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35817029	0.81[EUR][1000 genomes]
rs55663876	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55686873	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62312690	0.86[EUR][1000 genomes]
rs62312738	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62312743	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62313888	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6532212	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6532213	0.85[EUR][1000 genomes]
rs6814978	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6819755	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6830014	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6837222	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs723992	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7438673	0.87[EUR][1000 genomes]
rs7660182	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7661577	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7677884	0.87[EUR][1000 genomes]
rs7677966	0.87[EUR][1000 genomes]
rs7685355	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs992612	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv830005	chr4:90799398-90963420	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv594821	chr4:90871561-90962886	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv879537	chr4:90883047-91165346	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links