Variant report

Variant	rs13150142
Chromosome Location	chr4:22479781-22479782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1020917	0.81[CHB][hapmap]
rs1026659	0.97[ASN][1000 genomes]
rs10938901	0.95[ASN][1000 genomes]
rs11730179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11933465	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12646648	0.97[ASN][1000 genomes]
rs13101873	0.88[ASN][1000 genomes]
rs13109271	0.97[ASN][1000 genomes]
rs13125682	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13136131	0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs1564138	0.81[CHB][hapmap]
rs1564139	0.81[CHB][hapmap]
rs16872728	0.85[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs2323412	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2875040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4697307	0.85[JPT][hapmap]
rs56235800	0.83[ASN][1000 genomes]
rs61792059	0.92[ASN][1000 genomes]
rs7673893	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7697601	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7697959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9790453	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv878752	chr4:22414023-22501043	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22420600-22488000	Weak transcription	Aorta	Aorta
2	chr4:22450400-22484000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:22450400-22493200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:22456800-22485000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:22462000-22493200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:22462400-22483600	Weak transcription	Liver	Liver
7	chr4:22466600-22484000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:22472200-22480200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr4:22472600-22484200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:22472600-22484400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:22472600-22486200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:22472800-22482400	Weak transcription	Ovary	ovary
13	chr4:22473000-22482400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:22473200-22487400	Weak transcription	Right Ventricle	heart
15	chr4:22473400-22484400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr4:22473600-22484200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:22474000-22483200	Weak transcription	Fetal Brain Female	brain
18	chr4:22474200-22484000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr4:22474200-22486200	Weak transcription	Fetal Stomach	stomach
20	chr4:22474400-22484200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr4:22474400-22484400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr4:22474600-22482400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr4:22474600-22484200	Weak transcription	HSMMtube	muscle
24	chr4:22474800-22482000	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:22475000-22480000	Weak transcription	Primary T cells from cord blood	blood
26	chr4:22475000-22484000	Weak transcription	Left Ventricle	heart
27	chr4:22475000-22484800	Weak transcription	Fetal Intestine Large	intestine
28	chr4:22475000-22489400	Weak transcription	Lung	lung
29	chr4:22475200-22480000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr4:22475200-22482400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:22475200-22484200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr4:22475200-22486000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr4:22476600-22482600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr4:22476600-22484400	Weak transcription	Psoas Muscle	Psoas
35	chr4:22476600-22485200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr4:22476600-22487200	Weak transcription	Small Intestine	intestine
37	chr4:22476800-22481800	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr4:22477000-22481400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr4:22477000-22482400	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr4:22477000-22482400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr4:22477000-22482400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr4:22477000-22482800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr4:22477000-22484600	Weak transcription	Hela-S3	cervix
44	chr4:22477000-22484800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr4:22477000-22485000	Weak transcription	A549	lung
46	chr4:22477200-22482200	Weak transcription	HMEC	breast
47	chr4:22477200-22482400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr4:22477200-22484400	Weak transcription	Pancreas	Pancrea
49	chr4:22477600-22482400	Weak transcription	NHEK	skin
50	chr4:22477800-22482400	Weak transcription	Fetal Heart	heart

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