Variant report
| Variant | rs13150506 |
|---|---|
| Chromosome Location | chr4:120865574-120865575 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:120860025..120863004-chr4:120864528..120867684,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000250392 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs12502424 | 0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs13123289 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13146693 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1420613 | 0.83[EUR][1000 genomes] |
| rs1503537 | 0.85[CHB][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1503542 | 0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1847336 | 0.81[EUR][1000 genomes] |
| rs2111141 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2160499 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4834826 | 0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs924752 | 0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs991867 | 0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532739 | chr4:120392824-121098103 | Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 2 | nsv879849 | chr4:120823634-120922444 | Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv3466114 | chr4:120865139-120866880 | Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv3466113 | chr4:120865339-120866723 | Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv3466110 | chr4:120865386-120866700 | Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv3466111 | chr4:120865424-120866651 | Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 7 | esv3466112 | chr4:120865447-120866648 | Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 8 | nsv822712 | chr4:120865452-120866618 | Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 9 | esv3466115 | chr4:120865523-120866606 | Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:120865400-120865800 | Enhancers | HepG2 | liver |
