Variant report

Variant	rs13151111
Chromosome Location	chr4:16211332-16211333
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:16209849..16215808-chr4:16226595..16229936,7	MCF-7	breast:
2	chr4:16210098..16212174-chr4:16220610..16223093,2	K562	blood:
3	chr4:16206563..16211517-chr4:16224602..16229225,6	K562	blood:
4	chr4:16208663..16211668-chr4:16215718..16220403,4	K562	blood:

Variant related genes	Relation type
ENSG00000169762	Chromatin interaction
ENSG00000263327	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10017532	0.83[AFR][1000 genomes]
rs1025897	0.86[ASN][1000 genomes]
rs11730977	0.81[ASN][1000 genomes]
rs13133263	0.85[ASN][1000 genomes]
rs2028631	0.83[AFR][1000 genomes]
rs28654954	0.81[AFR][1000 genomes]
rs317873	0.81[ASN][1000 genomes]
rs35931597	0.85[AFR][1000 genomes]
rs4235382	0.85[AFR][1000 genomes]
rs6812660	0.85[ASN][1000 genomes]
rs6854115	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs961449	0.86[ASN][1000 genomes]
rs9995025	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998299	chr4:16031459-16226466	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv537047	chr4:16182060-16375787	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16168000-16213800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:16181200-16223800	Weak transcription	Fetal Brain Male	brain
3	chr4:16193000-16216000	Weak transcription	Spleen	Spleen
4	chr4:16193000-16225800	Weak transcription	Colonic Mucosa	Colon
5	chr4:16193200-16225800	Weak transcription	Fetal Brain Female	brain
6	chr4:16198600-16216400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:16198600-16221200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:16198600-16222400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:16198800-16211400	Weak transcription	Aorta	Aorta
10	chr4:16198800-16218800	Weak transcription	HSMM	muscle
11	chr4:16198800-16225600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:16198800-16226000	Weak transcription	NHEK	skin
13	chr4:16198800-16226400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:16199800-16215800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:16200000-16214200	Weak transcription	Fetal Heart	heart
16	chr4:16200800-16213600	Weak transcription	HUVEC	blood vessel
17	chr4:16200800-16214800	Weak transcription	Stomach Mucosa	stomach
18	chr4:16200800-16218000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:16202800-16220800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr4:16204200-16213800	Weak transcription	Ovary	ovary
21	chr4:16204800-16226600	Weak transcription	NH-A	brain
22	chr4:16205200-16225600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:16205800-16211600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:16206000-16211600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr4:16206400-16216000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:16206400-16218400	Weak transcription	Fetal Lung	lung
27	chr4:16206600-16218400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr4:16207400-16216000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr4:16207400-16223600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr4:16208200-16211400	Weak transcription	A549	lung
31	chr4:16208400-16214400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr4:16208400-16214800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr4:16208400-16219000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr4:16208400-16224400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr4:16208400-16225200	Weak transcription	Fetal Kidney	kidney
36	chr4:16208400-16225800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr4:16208800-16211600	Weak transcription	Left Ventricle	heart
38	chr4:16208800-16211600	Weak transcription	Right Atrium	heart
39	chr4:16208800-16213600	Weak transcription	Fetal Stomach	stomach
40	chr4:16208800-16213600	Weak transcription	Pancreas	Pancrea
41	chr4:16208800-16213600	Weak transcription	Right Ventricle	heart
42	chr4:16208800-16213800	Weak transcription	Fetal Intestine Small	intestine
43	chr4:16208800-16213800	Weak transcription	Lung	lung
44	chr4:16208800-16213800	Weak transcription	Small Intestine	intestine
45	chr4:16208800-16214400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr4:16208800-16214400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr4:16208800-16216000	Weak transcription	Psoas Muscle	Psoas
48	chr4:16208800-16216600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr4:16208800-16225600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr4:16208800-16225600	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links