Variant report
| Variant | rs13151776 |
|---|---|
| Chromosome Location | chr4:59428698-59428699 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10517442 | 0.83[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs11133575 | 0.83[CHB][hapmap];0.86[JPT][hapmap] |
| rs12499216 | 0.83[ASN][1000 genomes] |
| rs12510342 | 0.81[ASN][1000 genomes] |
| rs12510972 | 0.83[ASN][1000 genomes] |
| rs12511210 | 0.81[ASN][1000 genomes] |
| rs12512692 | 0.83[ASN][1000 genomes] |
| rs12640789 | 0.83[CHB][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs12643529 | 0.85[ASN][1000 genomes] |
| rs12643530 | 0.85[ASN][1000 genomes] |
| rs13101908 | 0.85[ASN][1000 genomes] |
| rs13103825 | 0.85[ASN][1000 genomes] |
| rs13108091 | 0.85[ASN][1000 genomes] |
| rs13109436 | 0.85[ASN][1000 genomes] |
| rs13109975 | 0.85[ASN][1000 genomes] |
| rs13146723 | 0.85[ASN][1000 genomes] |
| rs13149960 | 0.81[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs13151517 | 0.85[ASN][1000 genomes] |
| rs36064103 | 0.85[ASN][1000 genomes] |
| rs4146127 | 0.81[ASN][1000 genomes] |
| rs4146128 | 0.81[ASN][1000 genomes] |
| rs56185327 | 0.81[ASN][1000 genomes] |
| rs66732120 | 0.81[ASN][1000 genomes] |
| rs6834419 | 0.85[ASN][1000 genomes] |
| rs6857227 | 0.85[ASN][1000 genomes] |
| rs7654598 | 0.83[ASN][1000 genomes] |
| rs7659372 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2762438 | chr4:58712109-59441414 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1011418 | chr4:59081528-59674340 | Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv879030 | chr4:59379696-59548868 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:59427000-59428800 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
