Variant report

Variant	rs13152166
Chromosome Location	chr4:7686361-7686362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10011932	0.88[EUR][1000 genomes]
rs28420857	0.84[EUR][1000 genomes]
rs28459231	0.84[EUR][1000 genomes]
rs28594147	0.84[EUR][1000 genomes]
rs28757654	0.84[EUR][1000 genomes]
rs35306661	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv508272	chr4:7591967-7722112	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv878571	chr4:7637297-7743283	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv432557	chr4:7672785-7719249	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv4219	chr4:7672973-7694800	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv432559	chr4:7680536-7719249	ZNF genes & repeats Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv432563	chr4:7683417-7717629	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv432564	chr4:7683417-7719249	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7665200-7694800	Weak transcription	Liver	Liver
2	chr4:7679200-7695000	Weak transcription	Fetal Brain Male	brain
3	chr4:7679800-7715600	Weak transcription	Brain Germinal Matrix	brain
4	chr4:7681000-7686400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:7683200-7691600	Weak transcription	Fetal Kidney	kidney
6	chr4:7683200-7695200	Weak transcription	Fetal Brain Female	brain
7	chr4:7684000-7686400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
8	chr4:7685200-7687000	Strong transcription	Brain Cingulate Gyrus	brain
9	chr4:7685600-7686400	Strong transcription	Brain Hippocampus Middle	brain
10	chr4:7685600-7686800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:7685600-7707000	Weak transcription	Fetal Intestine Small	intestine
12	chr4:7685800-7686600	Strong transcription	Brain Substantia Nigra	brain
13	chr4:7685800-7692800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:7686000-7686600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:7686000-7687000	Strong transcription	Fetal Stomach	stomach
16	chr4:7686000-7690000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr4:7686000-7698600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:7686200-7686400	Enhancers	Esophagus	oesophagus
19	chr4:7686200-7691000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr4:7686200-7691200	Weak transcription	Brain Angular Gyrus	brain
21	chr4:7686200-7721000	Weak transcription	Brain Anterior Caudate	brain

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