Variant report

Variant	rs13153799
Chromosome Location	chr5:127903306-127903307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127896126..127898974-chr5:127902072..127903856,2	MCF-7	breast:
2	chr5:127881388..127883013-chr5:127901894..127903649,2	MCF-7	breast:

Extended variants
information (count: 177 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:173)

rs_ID	r²[population]
rs10428533	0.86[EUR][1000 genomes]
rs10428593	0.86[EUR][1000 genomes]
rs11241962	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11241964	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11241965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11948376	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11948920	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11949649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11949660	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11949692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11950568	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11950625	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11951267	0.80[AFR][1000 genomes]
rs11952247	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11952334	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11952602	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11953201	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11954034	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11954070	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11954906	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11955937	0.81[AFR][1000 genomes]
rs11956467	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11956495	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11957248	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11957280	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11957487	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11958376	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11958508	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11958996	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11959560	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12109254	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13153812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13154414	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13158744	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13160701	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13162214	0.86[EUR][1000 genomes]
rs13165572	0.90[EUR][1000 genomes]
rs13167932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13168271	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13168624	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13172385	0.86[EUR][1000 genomes]
rs13173782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179269	0.86[EUR][1000 genomes]
rs13181957	0.90[EUR][1000 genomes]
rs13186444	0.90[EUR][1000 genomes]
rs1363468	0.85[EUR][1000 genomes]
rs34012094	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34139509	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34615740	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34665677	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34881645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34912177	0.87[AMR][1000 genomes]
rs34968180	0.90[EUR][1000 genomes]
rs35024105	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35043622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35454462	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35544771	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36003105	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36052309	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36071106	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36125852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3924302	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4133248	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4298299	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4305681	0.85[EUR][1000 genomes]
rs4318822	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4323274	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4339399	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4345355	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4365880	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4377749	0.86[EUR][1000 genomes]
rs4380709	0.80[AFR][1000 genomes]
rs4400171	0.80[AFR][1000 genomes]
rs4410683	0.80[AFR][1000 genomes]
rs4418144	0.86[EUR][1000 genomes]
rs4425555	0.83[AFR][1000 genomes]
rs4425556	0.83[AFR][1000 genomes]
rs4455613	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4455614	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4493715	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4496752	0.80[AFR][1000 genomes]
rs4521535	0.90[EUR][1000 genomes]
rs4557470	0.80[AFR][1000 genomes]
rs4580821	0.83[AFR][1000 genomes]
rs4582335	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4587123	0.86[EUR][1000 genomes]
rs4608977	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4620068	0.83[AFR][1000 genomes]
rs4626373	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4628037	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4628038	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4634399	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55683423	0.80[AFR][1000 genomes]
rs55791343	0.80[AFR][1000 genomes]
rs56018106	0.80[AFR][1000 genomes]
rs56173634	0.84[AFR][1000 genomes]
rs56232757	0.84[AFR][1000 genomes]
rs56766733	0.84[AFR][1000 genomes]
rs57454105	0.84[AFR][1000 genomes]
rs58955919	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59143127	0.80[AFR][1000 genomes]
rs59567527	0.80[AFR][1000 genomes]
rs60574263	0.85[AFR][1000 genomes]
rs61358597	0.84[AFR][1000 genomes]
rs61375240	0.84[AFR][1000 genomes]
rs62390696	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62390702	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62390705	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62390715	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62390716	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62390718	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62390719	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62390724	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62390725	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62390726	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66899065	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67031953	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67539441	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67941180	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6863262	0.80[AFR][1000 genomes]
rs6863380	0.80[AFR][1000 genomes]
rs6863460	0.80[AFR][1000 genomes]
rs6864449	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6870737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6871698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6875600	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6876597	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6876609	0.80[AFR][1000 genomes]
rs6877748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6877872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6877956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6878062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6878172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6880762	0.80[AFR][1000 genomes]
rs6885752	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6886451	0.80[AFR][1000 genomes]
rs6891166	0.80[AFR][1000 genomes]
rs6892406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6897170	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6898190	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71587985	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73334912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73348066	0.84[AFR][1000 genomes]
rs73348070	0.84[AFR][1000 genomes]
rs73348077	0.84[AFR][1000 genomes]
rs73348078	0.84[AFR][1000 genomes]
rs73348080	0.83[AFR][1000 genomes]
rs73348085	0.84[AFR][1000 genomes]
rs73348087	0.82[AFR][1000 genomes]
rs73348099	0.84[AFR][1000 genomes]
rs73348102	0.84[AFR][1000 genomes]
rs73348296	0.80[AFR][1000 genomes]
rs73350104	0.80[AFR][1000 genomes]
rs73350109	0.80[AFR][1000 genomes]
rs73350115	0.80[AFR][1000 genomes]
rs73350134	0.80[AFR][1000 genomes]
rs73350195	0.80[AFR][1000 genomes]
rs73352225	0.80[AFR][1000 genomes]
rs7447218	0.84[AFR][1000 genomes]
rs7700287	0.80[AFR][1000 genomes]
rs7709582	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7715766	0.85[EUR][1000 genomes]
rs7720190	0.80[AFR][1000 genomes]
rs7724233	0.84[AFR][1000 genomes]
rs7724383	0.81[AFR][1000 genomes]
rs7725452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7727413	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7728360	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7728409	0.84[AFR][1000 genomes]
rs7730875	0.82[AFR][1000 genomes]
rs7732171	0.80[AFR][1000 genomes]
rs7734405	0.80[AFR][1000 genomes]
rs7735831	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531991	chr5:127624564-127966085	Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv427734	chr5:127805281-128088632	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv9966	chr5:127895818-127904284	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv14419	chr5:127901938-127903315	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs13153799	FBN2	cis	Nerve Tibial	GTEx
rs13153799	FBN2	cis	Adipose Subcutaneous	GTEx
rs13153799	FBN2	cis	Whole Blood	GTEx
rs13153799	FBN2	cis	Artery Tibial	GTEx
rs13153799	FBN2	cis	lung	GTEx
rs13153799	FBN2	cis	Thyroid	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127901400-127904000	Enhancers	Placenta	Placenta
2	chr5:127901600-127903600	Enhancers	Hela-S3	cervix
3	chr5:127902600-127903600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:127902600-127907200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:127902600-127907400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:127902800-127907800	Weak transcription	A549	lung
7	chr5:127903000-127903400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:127903200-127903800	Enhancers	Placenta Amnion	Placenta Amnion

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