Variant report

Variant	rs13154776
Chromosome Location	chr5:119790628-119790629
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10478463	0.87[EUR][1000 genomes]
rs13164896	0.87[EUR][1000 genomes]
rs13435959	0.85[AFR][1000 genomes]
rs34084512	0.87[EUR][1000 genomes]
rs71586485	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1018955	chr5:119679918-119802014	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1018100	chr5:119749898-119802014	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119783000-119793600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr5:119786200-119793600	Weak transcription	Right Ventricle	heart
3	chr5:119786200-119793800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:119787000-119798200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:119787400-119790800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:119787400-119793000	Weak transcription	Pancreas	Pancrea
7	chr5:119787400-119799600	Weak transcription	Psoas Muscle	Psoas
8	chr5:119787600-119791000	Enhancers	HSMM	muscle
9	chr5:119788800-119794000	Enhancers	Fetal Heart	heart
10	chr5:119789200-119791000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:119789200-119791200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:119789200-119791200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr5:119789400-119790800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:119789600-119791000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr5:119789800-119790800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr5:119789800-119790800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:119789800-119790800	Enhancers	Fetal Lung	lung
18	chr5:119790000-119790800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr5:119790000-119790800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:119790200-119790800	Active TSS	HSMMtube	muscle
21	chr5:119790400-119793600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr5:119790400-119793600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr5:119790400-119793600	Weak transcription	Aorta	Aorta
24	chr5:119790400-119793800	Weak transcription	Adipose Nuclei	Adipose
25	chr5:119790400-119793800	Weak transcription	Fetal Kidney	kidney
26	chr5:119790400-119799600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr5:119790600-119790800	Enhancers	Osteobl	bone
28	chr5:119790600-119791000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr5:119790600-119791000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr5:119790600-119791200	Enhancers	Muscle Satellite Cultured Cells	--
31	chr5:119790600-119791200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr5:119790600-119791200	Enhancers	NHDF-Ad	bronchial
33	chr5:119790600-119793400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr5:119790600-119793800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr5:119790600-119793800	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links