Variant report

Variant	rs13155267
Chromosome Location	chr5:90193468-90193469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10035307	0.97[ASN][1000 genomes]
rs10045202	0.94[ASN][1000 genomes]
rs2367181	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3105793	0.92[EUR][1000 genomes]
rs34088804	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35381887	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4244205	0.96[ASN][1000 genomes]
rs4496735	0.98[ASN][1000 genomes]
rs4580808	0.98[ASN][1000 genomes]
rs4637585	0.98[ASN][1000 genomes]
rs57190680	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58729412	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60873835	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61424527	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62374012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62374016	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6868618	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv882367	chr5:89956991-90209824	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1015449	chr5:89968626-90219398	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv517049	chr5:90003131-90262475	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	esv2754394	chr5:90181320-90225796	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90163600-90194400	Weak transcription	Pancreas	Pancrea
2	chr5:90185000-90226600	Weak transcription	K562	blood
3	chr5:90186400-90218000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:90186600-90193600	Weak transcription	Hela-S3	cervix
5	chr5:90190400-90194400	Weak transcription	Stomach Mucosa	stomach
6	chr5:90191000-90194400	Enhancers	Liver	Liver
7	chr5:90191400-90193800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:90191800-90193600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:90191800-90195000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:90192000-90193600	Weak transcription	Esophagus	oesophagus
11	chr5:90192600-90193600	Weak transcription	Fetal Intestine Small	intestine
12	chr5:90192600-90193600	Enhancers	A549	lung
13	chr5:90192800-90193600	Weak transcription	Gastric	stomach
14	chr5:90192800-90204400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr5:90192800-90204800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr5:90193000-90193800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr5:90193400-90194600	Enhancers	HepG2	liver
18	chr5:90193400-90194600	Enhancers	NHEK	skin
19	chr5:90193400-90195200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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