Variant report

Variant	rs13155699
Chromosome Location	chr5:177592550-177592551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:156562075..156564821-chr5:177591902..177594899,2	K562	blood:
2	chr5:177591354..177594975-chr5:177630282..177634044,5	MCF-7	breast:
3	chr5:177588875..177592834-chr5:177630545..177633533,4	K562	blood:

Variant related genes	Relation type
ENSG00000163382	Chromatin interaction
ENSG00000197451	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10060446	0.87[ASN][1000 genomes]
rs10074810	0.94[ASN][1000 genomes]
rs11948118	0.84[ASN][1000 genomes]
rs12655707	0.82[ASN][1000 genomes]
rs13163671	0.81[ASN][1000 genomes]
rs13165989	0.97[ASN][1000 genomes]
rs13175750	0.84[ASN][1000 genomes]
rs13185763	0.94[ASN][1000 genomes]
rs34093388	0.87[ASN][1000 genomes]
rs34343747	0.94[ASN][1000 genomes]
rs34353050	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs35433113	0.85[ASN][1000 genomes]
rs35598853	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35865171	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3812073	0.82[ASN][1000 genomes]
rs3812077	0.81[ASN][1000 genomes]
rs3812080	0.81[ASN][1000 genomes]
rs3924305	0.82[ASN][1000 genomes]
rs6601217	0.91[ASN][1000 genomes]
rs6870545	0.86[EUR][1000 genomes]
rs6886057	0.94[ASN][1000 genomes]
rs7443359	0.96[ASN][1000 genomes]
rs7448252	0.95[ASN][1000 genomes]
rs7710363	0.87[EUR][1000 genomes]
rs7716860	0.90[ASN][1000 genomes]
rs7722349	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1021198	chr5:177386267-177611648	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
4	nsv1019404	chr5:177507080-177859089	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	126 gene(s)	inside rSNPs	diseases
5	nsv883190	chr5:177532201-177620189	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv600394	chr5:177549491-177608195	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv1017664	chr5:177578194-177633116	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
8	nsv482872	chr5:177580298-177744381	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	106 gene(s)	inside rSNPs	diseases
9	nsv883193	chr5:177591495-177620189	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177591000-177592600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:177591000-177593000	Enhancers	Fetal Heart	heart
3	chr5:177591400-177594800	Weak transcription	Right Atrium	heart
4	chr5:177591600-177593200	Weak transcription	Esophagus	oesophagus
5	chr5:177591800-177592800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:177591800-177593000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:177591800-177597800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:177592000-177596200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:177592000-177596400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr5:177592000-177596600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:177592000-177596800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr5:177592000-177596800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:177592000-177597600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:177592200-177593000	Bivalent Enhancer	Placenta	Placenta
15	chr5:177592400-177592600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr5:177592400-177593000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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