Variant report

Variant	rs13158501
Chromosome Location	chr5:15261054-15261055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1158349	0.82[ASN][1000 genomes]
rs11954098	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1447277	0.82[ASN][1000 genomes]
rs1457161	0.82[ASN][1000 genomes]
rs1598741	0.82[ASN][1000 genomes]
rs166029	0.95[ASN][1000 genomes]
rs177360	0.82[ASN][1000 genomes]
rs181796	0.95[ASN][1000 genomes]
rs1840874	0.82[ASN][1000 genomes]
rs2100613	0.82[ASN][1000 genomes]
rs2252465	0.82[ASN][1000 genomes]
rs2252466	0.82[ASN][1000 genomes]
rs2438385	0.95[ASN][1000 genomes]
rs2454884	0.95[ASN][1000 genomes]
rs2577986	0.87[ASN][1000 genomes]
rs2577987	0.82[ASN][1000 genomes]
rs2593558	0.82[ASN][1000 genomes]
rs2607529	0.92[ASN][1000 genomes]
rs303338	0.82[ASN][1000 genomes]
rs303358	0.82[ASN][1000 genomes]
rs303359	0.82[ASN][1000 genomes]
rs303360	0.82[ASN][1000 genomes]
rs303362	0.82[ASN][1000 genomes]
rs34795850	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35345872	0.84[ASN][1000 genomes]
rs664016	1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs752386	0.82[ASN][1000 genomes]
rs897817	0.82[ASN][1000 genomes]
rs897818	0.82[ASN][1000 genomes]
rs897819	0.82[ASN][1000 genomes]
rs897820	0.82[ASN][1000 genomes]
rs897821	0.82[ASN][1000 genomes]
rs975620	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530221	chr5:14859687-15364470	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv881665	chr5:15149009-15317509	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv830213	chr5:15181147-15322203	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15259000-15262000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:15259000-15262600	Enhancers	Fetal Muscle Leg	muscle
3	chr5:15259400-15262600	Enhancers	Fetal Heart	heart
4	chr5:15259800-15262200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:15260000-15262200	Enhancers	NHDF-Ad	bronchial
6	chr5:15260000-15262600	Enhancers	Fetal Stomach	stomach
7	chr5:15260200-15261400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:15260200-15261400	Enhancers	Fetal Kidney	kidney
9	chr5:15260200-15261600	Enhancers	HSMM	muscle
10	chr5:15260200-15262000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:15260200-15262200	Enhancers	Brain Germinal Matrix	brain
12	chr5:15260200-15262600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:15260400-15261200	Active TSS	Aorta	Aorta
14	chr5:15260400-15262000	Enhancers	NHLF	lung
15	chr5:15260400-15262400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:15260400-15262600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:15260600-15261200	Active TSS	Colon Smooth Muscle	Colon
18	chr5:15260600-15261400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:15260800-15261400	Flanking Active TSS	Fetal Lung	lung
20	chr5:15260800-15261600	Flanking Active TSS	HSMMtube	muscle
21	chr5:15260800-15262200	Enhancers	Right Atrium	heart
22	chr5:15260800-15262400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr5:15260800-15262400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr5:15261000-15261400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:15261000-15261600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr5:15261000-15261600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:15261000-15262000	Enhancers	Brain Cingulate Gyrus	brain
28	chr5:15261000-15262000	Enhancers	Ovary	ovary
29	chr5:15261000-15262200	Enhancers	Fetal Brain Male	brain
30	chr5:15261000-15262200	Enhancers	Stomach Smooth Muscle	stomach
31	chr5:15261000-15262600	Enhancers	Rectal Smooth Muscle	rectum

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