Variant report

Variant	rs13159087
Chromosome Location	chr5:177061598-177061599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:177033397..177036154-chr5:177060023..177062974,2	K562	blood:

Variant related genes	Relation type
ENSG00000027847	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916108	chr5:176688459-177078723	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
2	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
3	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
4	nsv883182	chr5:176980995-177322056	Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv969021	chr5:177060702-177111251	Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177044400-177061800	Weak transcription	Small Intestine	intestine
2	chr5:177046600-177068400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:177046600-177069200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr5:177046600-177069600	Weak transcription	Esophagus	oesophagus
5	chr5:177046800-177065800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:177046800-177084000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr5:177047000-177079000	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:177047200-177064000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:177047200-177070800	Weak transcription	Pancreas	Pancrea
10	chr5:177047400-177075000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:177047800-177068200	Weak transcription	Fetal Intestine Large	intestine
12	chr5:177047800-177069000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:177047800-177080200	Weak transcription	Primary B cells from cord blood	blood
14	chr5:177048000-177069000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr5:177048400-177066800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:177048800-177063200	Weak transcription	Fetal Brain Female	brain
17	chr5:177048800-177083600	Weak transcription	Fetal Lung	lung
18	chr5:177051600-177069000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr5:177051800-177080200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:177052000-177083200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr5:177052000-177085600	Weak transcription	Gastric	stomach
22	chr5:177052200-177070000	Weak transcription	Primary T cells from cord blood	blood
23	chr5:177052400-177065200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:177052800-177068200	Weak transcription	Spleen	Spleen
25	chr5:177052800-177070200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr5:177052800-177070200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr5:177052800-177070400	Weak transcription	Adipose Nuclei	Adipose
28	chr5:177052800-177076400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr5:177054000-177084600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr5:177054200-177062000	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr5:177054200-177066600	Weak transcription	Dnd41	blood
32	chr5:177054200-177069200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr5:177054200-177070000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr5:177054400-177068200	Weak transcription	Ovary	ovary
35	chr5:177054400-177068200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr5:177054400-177096000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr5:177054600-177062000	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr5:177058000-177066400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr5:177059000-177068400	Weak transcription	Aorta	Aorta
40	chr5:177059200-177062200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr5:177059400-177067600	Weak transcription	Thymus	Thymus
42	chr5:177059600-177068200	Weak transcription	Lung	lung
43	chr5:177059800-177066000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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