Variant report
| Variant | rs13159525 |
|---|---|
| Chromosome Location | chr9:109098982-109098983 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:109094235..109097011-chr9:109098401..109100372,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1030466 | 0.82[ASN][1000 genomes] |
| rs10463674 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11241342 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11749150 | 0.80[EUR][1000 genomes] |
| rs12189092 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs13154483 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs13176642 | 0.88[EUR][1000 genomes] |
| rs13179643 | 0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs13187002 | 0.89[EUR][1000 genomes] |
| rs2416421 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs34045456 | 0.85[EUR][1000 genomes] |
| rs34246371 | 0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs34883244 | 0.80[ASN][1000 genomes] |
| rs35332646 | 0.81[EUR][1000 genomes] |
| rs4515325 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs5026172 | 0.88[EUR][1000 genomes] |
| rs62371498 | 0.81[EUR][1000 genomes] |
| rs62371499 | 0.81[EUR][1000 genomes] |
| rs6873697 | 0.81[EUR][1000 genomes] |
| rs6873752 | 0.89[EUR][1000 genomes] |
| rs6873890 | 0.81[EUR][1000 genomes] |
| rs6874401 | 0.81[EUR][1000 genomes] |
| rs6895766 | 0.81[EUR][1000 genomes] |
| rs7709412 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7722770 | 0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7722881 | 0.81[EUR][1000 genomes] |
| rs890785 | 0.81[EUR][1000 genomes] |
| rs895293 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869202 | chr9:108940763-109811530 | Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:109097200-109103000 | Weak transcription | Fetal Heart | heart |
