Variant report

Variant	rs13160152
Chromosome Location	chr5:145235481-145235482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:145212960..145219188-chr5:145232213..145235932,5	K562	blood:
2	chr5:145233530..145236507-chr5:145244949..145247548,2	K562	blood:
3	chr5:145200389..145203270-chr5:145232489..145236140,3	K562	blood:
4	chr5:145213641..145216499-chr5:145233282..145236150,2	MCF-7	breast:
5	chr5:145214403..145219656-chr5:145231779..145235549,6	K562	blood:
6	chr5:145230827..145232577-chr5:145232583..145235834,3	K562	blood:
7	chr5:145228302..145230398-chr5:145235405..145237342,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000186314	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10062574	0.83[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs10078601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17103810	0.83[CHB][hapmap]
rs6863175	0.80[ASN][1000 genomes]
rs6892053	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145231000-145235800	Enhancers	Fetal Intestine Large	intestine
2	chr5:145231400-145236000	Enhancers	Fetal Intestine Small	intestine
3	chr5:145232800-145235600	Weak transcription	Aorta	Aorta
4	chr5:145232800-145235800	Weak transcription	Pancreas	Pancrea
5	chr5:145233200-145235800	Weak transcription	Colonic Mucosa	Colon
6	chr5:145233400-145235600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:145233400-145235600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:145233800-145236400	Enhancers	Stomach Mucosa	stomach
9	chr5:145234000-145235600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:145234000-145235600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:145234000-145235600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:145234000-145235600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:145234000-145235600	Enhancers	NHEK	skin
14	chr5:145234000-145235600	Enhancers	Osteobl	bone
15	chr5:145234000-145235800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:145234000-145235800	Enhancers	HUVEC	blood vessel
17	chr5:145234000-145235800	Enhancers	NH-A	brain
18	chr5:145234000-145235800	Enhancers	NHDF-Ad	bronchial
19	chr5:145234000-145236000	Enhancers	HMEC	breast
20	chr5:145234000-145236400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:145234000-145236400	Enhancers	Small Intestine	intestine
22	chr5:145234200-145235600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr5:145234200-145235600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr5:145234200-145235600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr5:145234200-145235800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:145234200-145235800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr5:145234200-145235800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr5:145234200-145235800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:145234200-145235800	Enhancers	NHLF	lung
30	chr5:145234200-145236200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:145234400-145235600	Enhancers	Primary hematopoietic stem cells	blood
32	chr5:145234400-145235600	Weak transcription	Psoas Muscle	Psoas
33	chr5:145234400-145236000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr5:145234400-145236400	Enhancers	Gastric	stomach
35	chr5:145234600-145235600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr5:145234600-145235600	Enhancers	H9 Cell Line	embryonic stem cell
37	chr5:145234600-145235600	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr5:145234600-145235600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr5:145234600-145235600	Weak transcription	Lung	lung
40	chr5:145234600-145235800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr5:145234600-145235800	Enhancers	Duodenum Mucosa	Duodenum
42	chr5:145234600-145236000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr5:145234800-145235600	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr5:145234800-145235600	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr5:145234800-145235600	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr5:145234800-145235600	Enhancers	A549	lung
47	chr5:145234800-145235600	Weak transcription	HSMMtube	muscle
48	chr5:145234800-145235800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr5:145234800-145235800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr5:145234800-145235800	Weak transcription	Esophagus	oesophagus

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