Variant report

Variant	rs13161195
Chromosome Location	chr5:54114816-54114817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10036606	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10461588	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13173669	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4242046	0.82[AMR][1000 genomes]
rs4289528	0.85[AMR][1000 genomes]
rs4320207	0.82[AMR][1000 genomes]
rs4519880	0.82[AFR][1000 genomes]
rs4527556	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6450253	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7731103	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9687636	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9968754	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3358092	chr5:54077828-54189150	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3344832	chr5:54112445-54114943	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54109400-54117800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:54114600-54115000	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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