Variant report

Variant	rs13161679
Chromosome Location	chr5:15509930-15509931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34379089	0.87[AMR][1000 genomes]
rs71595941	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15501600-15512000	Weak transcription	Small Intestine	intestine
2	chr5:15501800-15511000	Weak transcription	Lung	lung
3	chr5:15501800-15523800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:15502000-15511600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:15502000-15515000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:15502000-15522200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:15502600-15510800	Weak transcription	Aorta	Aorta
8	chr5:15502600-15522400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:15502600-15535400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:15502800-15510600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:15502800-15513600	Weak transcription	Right Ventricle	heart
12	chr5:15502800-15514600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:15502800-15521400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr5:15503000-15510400	Weak transcription	NH-A	brain
15	chr5:15503400-15521000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr5:15503600-15510800	Weak transcription	Left Ventricle	heart
17	chr5:15503800-15510200	Weak transcription	HUVEC	blood vessel
18	chr5:15503800-15510600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr5:15503800-15521000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:15504200-15510400	Weak transcription	Dnd41	blood
21	chr5:15504200-15511600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:15504600-15511200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr5:15504600-15512000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr5:15504600-15521200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:15505200-15511000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr5:15505200-15512600	Enhancers	Fetal Heart	heart
27	chr5:15505400-15510800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr5:15505800-15517400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr5:15506000-15511400	Weak transcription	Fetal Stomach	stomach
30	chr5:15506800-15510400	Weak transcription	Fetal Kidney	kidney
31	chr5:15506800-15511000	Weak transcription	Fetal Lung	lung
32	chr5:15507000-15513400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr5:15507600-15510000	Weak transcription	Adipose Nuclei	Adipose
34	chr5:15508600-15512000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr5:15509200-15510400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr5:15509200-15510800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr5:15509200-15511600	Enhancers	HSMMtube	muscle
38	chr5:15509200-15511600	Enhancers	NHLF	lung
39	chr5:15509200-15512400	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr5:15509400-15510000	Enhancers	H1 Cell Line	embryonic stem cell
41	chr5:15509400-15510200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr5:15509400-15510200	Flanking Active TSS	HSMM	muscle
43	chr5:15509600-15510200	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr5:15509600-15510200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr5:15509600-15510800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr5:15509600-15511400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr5:15509600-15512000	Enhancers	Colon Smooth Muscle	Colon
48	chr5:15509600-15512000	Enhancers	NHDF-Ad	bronchial
49	chr5:15509600-15512400	Enhancers	Brain Anterior Caudate	brain
50	chr5:15509800-15510000	Enhancers	Right Atrium	heart

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