Variant report

Variant	rs13162779
Chromosome Location	chr5:94937890-94937891
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94892921..94894446-chr5:94936701..94939146,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1123965	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1162859	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2059786	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2560256	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2560275	0.95[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2560276	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2560277	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2731816	0.83[YRI][hapmap]
rs2731818	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2731828	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2731838	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4573018	0.95[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6556871	0.86[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13162779	TTC37	cis	Whole Blood	GTEx

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94900400-94942400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:94904600-94939400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr5:94905000-94939200	Weak transcription	Aorta	Aorta
4	chr5:94905000-94940600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:94912800-94943400	Weak transcription	Fetal Intestine Small	intestine
6	chr5:94915000-94939000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:94917400-94940800	Weak transcription	Fetal Brain Male	brain
8	chr5:94926400-94941800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr5:94926800-94938600	Weak transcription	K562	blood
10	chr5:94926800-94942000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr5:94927000-94940800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:94927000-94948800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr5:94927000-94954200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr5:94927000-94954200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr5:94927400-94938400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr5:94927600-94951800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr5:94927800-94941200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:94927800-94952200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr5:94928200-94938400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:94928200-94952200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:94928400-94938200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:94928400-94948600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr5:94928600-94941800	Weak transcription	HMEC	breast
24	chr5:94933600-94948600	Weak transcription	Pancreas	Pancrea
25	chr5:94935000-94940000	Weak transcription	Brain Hippocampus Middle	brain
26	chr5:94935200-94941000	Weak transcription	Fetal Stomach	stomach
27	chr5:94935200-94942000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr5:94935800-94938200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:94935800-94939200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr5:94936000-94938600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr5:94936200-94938000	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr5:94936200-94938200	Strong transcription	Primary T cells from cord blood	blood
33	chr5:94936200-94938600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr5:94936400-94939600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr5:94936600-94938000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr5:94936600-94938000	Strong transcription	Fetal Muscle Trunk	muscle
37	chr5:94936600-94938000	Strong transcription	Fetal Thymus	thymus
38	chr5:94936800-94938000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr5:94936800-94938000	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr5:94936800-94938000	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr5:94936800-94938000	Weak transcription	Fetal Heart	heart
42	chr5:94936800-94938400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr5:94937000-94940800	Weak transcription	Osteobl	bone
44	chr5:94937000-94941600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr5:94937000-94943400	Weak transcription	Fetal Muscle Leg	muscle
46	chr5:94937200-94939000	Weak transcription	Adipose Nuclei	Adipose
47	chr5:94937200-94939000	Weak transcription	Fetal Kidney	kidney
48	chr5:94937200-94940800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr5:94937200-94948200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr5:94937400-94945400	Weak transcription	Fetal Lung	lung

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