Variant report

Variant	rs13163102
Chromosome Location	chr5:107973437-107973438
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107965170..107967420-chr5:107972651..107975039,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12109828	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13171274	1.00[JPT][hapmap]
rs34304283	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34465355	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34961984	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35153895	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35858291	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36019130	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36052796	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36066723	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59214651	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67326538	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67718253	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6871967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71592759	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785503	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72785509	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7444560	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709109	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1019409	chr5:107934028-107991426	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107970200-107977800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:107970600-107977800	Weak transcription	Osteobl	bone
3	chr5:107970800-107974800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:107971400-107973600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:107971400-107973600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr5:107971400-107973600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:107971400-107973600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr5:107971600-107973600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr5:107971600-107973600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:107971600-107973600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr5:107972200-107974000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:107972200-107974000	Enhancers	NHDF-Ad	bronchial
13	chr5:107972400-107973600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:107972400-107973800	Enhancers	NHEK	skin
15	chr5:107972600-107973600	Enhancers	HMEC	breast
16	chr5:107972600-107973800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:107972600-107977400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:107972600-107977600	Weak transcription	GM12878-XiMat	blood
19	chr5:107972800-107973600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:107972800-107974000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:107973000-107975000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr5:107973200-107973600	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr5:107973400-107973800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:107973400-107975200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr5:107973400-107976400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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