Variant report

Variant	rs13163290
Chromosome Location	chr5:29296782-29296783
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13163147	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13163695	0.81[EUR][1000 genomes]
rs13169475	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13169841	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13170090	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13173392	0.97[EUR][1000 genomes]
rs13186171	0.90[AMR][1000 genomes]
rs34286636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34424405	0.83[EUR][1000 genomes]
rs34745063	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34946282	0.81[EUR][1000 genomes]
rs35044810	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35166177	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35221929	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35229135	0.83[EUR][1000 genomes]
rs35286417	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35346985	0.83[EUR][1000 genomes]
rs35420031	0.83[EUR][1000 genomes]
rs35767223	0.83[EUR][1000 genomes]
rs35998955	0.83[EUR][1000 genomes]
rs71621769	0.81[EUR][1000 genomes]
rs71621777	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71621784	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3528360	chr5:29069255-29548659	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv3528361	chr5:29069255-29548659	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1031329	chr5:29177677-29760923	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv537713	chr5:29177677-29760923	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv880414	chr5:29194872-29495564	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv881552	chr5:29219030-29466930	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1024756	chr5:29220387-29501672	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv880722	chr5:29249544-29466930	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv968157	chr5:29252358-29348040	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv462083	chr5:29254574-29327911	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
13	nsv597752	chr5:29254574-29327911	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
14	nsv880278	chr5:29286698-29416226	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	nsv880605	chr5:29286698-29466930	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29295200-29297600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:29296600-29296800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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