Variant report

Variant	rs13163911
Chromosome Location	chr5:74430261-74430262
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs13153981	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13154480	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13155164	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13155239	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13155776	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13160456	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13163135	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13163445	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs13166151	1.00[AFR][1000 genomes]
rs13167286	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13167960	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13168183	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13170229	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13172144	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13173378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13188005	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13188387	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34107066	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34176032	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34210565	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34321815	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34399231	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34474481	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34520364	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34791871	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35025540	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35047596	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35172773	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35216453	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35337274	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35342043	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs35418425	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs35436965	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35446235	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35481376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35521134	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35532534	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35763548	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35772263	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35780895	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35888179	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35951833	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36094531	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36125171	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71612321	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71612328	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71620148	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71620151	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71620154	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71620156	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71620157	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71620158	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8185265	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13163911	LOC647121	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74427600-74434600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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