The 2.0 version of rSNPBase

Variant report

Variant rs1316420
Chromosome Location chr1:212104280-212104281
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212084800-212113000 Weak transcription Brain Anterior Caudate brain
2 chr1:212098800-212106000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:212100600-212104400 Enhancers Fetal Intestine Small intestine
4 chr1:212100600-212104800 Enhancers Fetal Intestine Large intestine
5 chr1:212100600-212109000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr1:212101400-212107800 Enhancers Primary monocytes fromperipheralblood blood
7 chr1:212102000-212106200 Weak transcription Right Atrium heart
8 chr1:212102000-212109000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr1:212102400-212106200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr1:212102400-212107800 Weak transcription Spleen Spleen
11 chr1:212102400-212113200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr1:212102600-212104400 Weak transcription Fetal Muscle Leg muscle
13 chr1:212102600-212115200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr1:212102600-212120400 Weak transcription Placenta Amnion Placenta Amnion
15 chr1:212102800-212105800 Weak transcription HSMMtube muscle
16 chr1:212102800-212111400 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr1:212102800-212114400 Weak transcription HUES64 Cell Line embryonic stem cell
18 chr1:212102800-212115000 Weak transcription Fetal Thymus thymus
19 chr1:212102800-212115200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr1:212103000-212104400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
21 chr1:212103000-212105000 Enhancers K562 blood
22 chr1:212103000-212106000 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr1:212103000-212107800 Weak transcription ES-I3 Cell Line embryonic stem cell
24 chr1:212103000-212132600 Weak transcription Gastric stomach
25 chr1:212103200-212105400 Weak transcription Primary B cells from cord blood blood
26 chr1:212103200-212106000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr1:212103200-212107800 Weak transcription H1 Cell Line embryonic stem cell
28 chr1:212103200-212108600 Weak transcription iPS-18 Cell Line embryonic stem cell
29 chr1:212103200-212115000 Weak transcription HUES6 Cell Line embryonic stem cell
30 chr1:212103200-212115000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr1:212103200-212115200 Weak transcription HUES48 Cell Line embryonic stem cell
32 chr1:212103200-212115200 Weak transcription iPS-20b Cell Line embryonic stem cell
33 chr1:212103400-212104800 Enhancers Hela-S3 cervix
34 chr1:212103400-212105400 Enhancers Monocytes-CD14+_RO01746 blood
35 chr1:212103400-212106000 Weak transcription iPS-15b Cell Line embryonic stem cell
36 chr1:212103400-212106000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
37 chr1:212103400-212111600 Weak transcription Liver Liver
38 chr1:212103400-212113200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr1:212103400-212113200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:212103600-212104400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr1:212103600-212104600 Weak transcription Breast Myoepithelial Primary Cells Breast
42 chr1:212103600-212105400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
43 chr1:212103600-212105600 Weak transcription Primary neutrophils fromperipheralblood blood
44 chr1:212103600-212106000 Weak transcription Pancreas Pancrea
45 chr1:212103600-212106200 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr1:212103600-212111800 Weak transcription Rectal Mucosa Donor 29 rectum
47 chr1:212103600-212111800 Weak transcription Sigmoid Colon Sigmoid Colon
48 chr1:212103600-212115000 Weak transcription NHEK skin
49 chr1:212103600-212115400 Weak transcription HMEC breast
50 chr1:212103600-212132200 Weak transcription Esophagus oesophagus

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Last update: Aug 31, 2015