Variant report

Variant	rs13165743
Chromosome Location	chr5:96735407-96735408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96735260..96736761-chr7:31786509..31788468,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12109601	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13153707	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13155794	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13163725	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13169233	0.89[EUR][1000 genomes]
rs13171321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13177167	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13179188	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13180130	0.84[AMR][1000 genomes]
rs13185943	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs291805	0.83[EUR][1000 genomes]
rs34005364	0.88[AMR][1000 genomes]
rs34133136	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34336519	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34529618	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34688594	0.84[AMR][1000 genomes]
rs35426235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35436092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35652324	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35740280	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35751448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35807449	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35887125	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35918511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36052400	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36062085	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6556954	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6862780	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71654361	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71654362	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71654363	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71654364	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7711047	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7718270	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7721798	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7723911	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1019790	chr5:96471680-96980633	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv537812	chr5:96471680-96980633	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv534326	chr5:96531217-97283481	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv882394	chr5:96538585-97108559	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1032548	chr5:96565121-97046804	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv537813	chr5:96565121-97046804	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv830415	chr5:96597763-96764157	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1025654	chr5:96613448-96817528	ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96728800-96735600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:96734600-96735800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:96735200-96736000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:96735200-96736000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:96735200-96737000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:96735200-96738400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:96735400-96735600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr5:96735400-96735600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:96735400-96736000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:96735400-96736000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:96735400-96736200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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