Variant report

Variant	rs13166413
Chromosome Location	chr5:105790223-105790224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10039212	0.88[ASN][1000 genomes]
rs10045017	0.95[ASN][1000 genomes]
rs11746628	0.80[ASN][1000 genomes]
rs11958027	0.89[ASN][1000 genomes]
rs1394620	0.88[ASN][1000 genomes]
rs1394621	0.88[ASN][1000 genomes]
rs28759714	0.89[ASN][1000 genomes]
rs4370259	0.85[ASN][1000 genomes]
rs59849015	0.89[ASN][1000 genomes]
rs6596667	0.82[ASN][1000 genomes]
rs6596668	0.87[ASN][1000 genomes]
rs6596670	0.93[ASN][1000 genomes]
rs6894853	0.84[ASN][1000 genomes]
rs7449172	0.95[ASN][1000 genomes]
rs7714955	0.88[ASN][1000 genomes]
rs7715017	0.88[ASN][1000 genomes]
rs7720454	0.83[ASN][1000 genomes]
rs7729740	0.86[ASN][1000 genomes]
rs959194	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599285	chr5:105355890-106271223	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv428123	chr5:105475935-106025350	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3427509	chr5:105505316-105871362	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv462373	chr5:105507543-105795975	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv599291	chr5:105507543-105795975	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv471036	chr5:105507543-105955784	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv882669	chr5:105619741-105936330	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv882671	chr5:105628610-105866862	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv462374	chr5:105635825-105828189	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv599292	chr5:105635825-105828189	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv882672	chr5:105673460-105818481	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv882673	chr5:105751350-105989479	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv1016354	chr5:105752391-106392762	ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv599293	chr5:105757300-105830691	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:105789000-105791400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:105789000-105791400	Enhancers	HMEC	breast
3	chr5:105789400-105790400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:105789800-105791200	Enhancers	Brain Hippocampus Middle	brain
5	chr5:105790000-105790800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:105790000-105791000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:105790000-105791200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr5:105790000-105791400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:105790000-105791400	Enhancers	NHEK	skin
10	chr5:105790200-105790600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr5:105790200-105790800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr5:105790200-105790800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr5:105790200-105790800	Enhancers	Brain Angular Gyrus	brain
14	chr5:105790200-105791200	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
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