Variant report

Variant	rs13166574
Chromosome Location	chr5:106695274-106695275
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10447299	0.90[ASN][1000 genomes]
rs1121840	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12514805	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13189743	0.89[ASN][1000 genomes]
rs1593022	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35563722	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6860893	0.90[ASN][1000 genomes]
rs6893449	0.90[ASN][1000 genomes]
rs7708173	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2760982	chr5:106680849-106702473	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106682000-106695600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:106683600-106697800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:106693600-106695800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr5:106694600-106695800	Enhancers	Brain Germinal Matrix	brain
5	chr5:106694800-106695400	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr5:106694800-106695600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:106694800-106695800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:106694800-106695800	Enhancers	Fetal Lung	lung
9	chr5:106694800-106695800	Enhancers	HUVEC	blood vessel
10	chr5:106694800-106695800	Enhancers	NHDF-Ad	bronchial
11	chr5:106694800-106696400	Enhancers	Dnd41	blood
12	chr5:106694800-106702400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr5:106695000-106695600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:106695000-106695600	Enhancers	Adipose Nuclei	Adipose
15	chr5:106695000-106695800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:106695000-106695800	Enhancers	A549	lung
17	chr5:106695000-106696000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr5:106695000-106696000	Enhancers	Fetal Stomach	stomach
19	chr5:106695000-106696200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr5:106695000-106699000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr5:106695200-106695400	Enhancers	GM12878-XiMat	blood
22	chr5:106695200-106695800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:106695200-106695800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr5:106695200-106696000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:106695200-106696000	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr5:106695200-106696000	Enhancers	Osteobl	bone
27	chr5:106695200-106696200	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr5:106695200-106696200	Enhancers	Hela-S3	cervix
29	chr5:106695200-106696400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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