Variant report

Variant	rs13167624
Chromosome Location	chr5:44825328-44825329
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13165992	0.93[AFR][1000 genomes]
rs16901958	0.88[AFR][1000 genomes]
rs35278372	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830279	chr5:44688175-44860815	Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1027897	chr5:44695278-45061623	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv880712	chr5:44777878-44842260	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv881564	chr5:44783255-44914579	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv881629	chr5:44796042-44836788	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
6	nsv881184	chr5:44796042-44842260	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
7	nsv880618	chr5:44800665-44836788	Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
8	nsv881418	chr5:44800665-44869100	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
9	nsv880397	chr5:44800665-44939293	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
10	nsv462127	chr5:44803749-44834233	Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
11	nsv597934	chr5:44803749-44834233	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
12	nsv880838	chr5:44805926-44836788	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
13	nsv881498	chr5:44805926-44842260	Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44810000-44828000	Weak transcription	Gastric	stomach
2	chr5:44810000-44839000	Weak transcription	Pancreas	Pancrea
3	chr5:44810200-44837600	Weak transcription	Esophagus	oesophagus
4	chr5:44810800-44828000	Weak transcription	Right Ventricle	heart
5	chr5:44810800-44829400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:44810800-44832200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:44810800-44833000	Weak transcription	Psoas Muscle	Psoas
8	chr5:44810800-44835800	Weak transcription	Aorta	Aorta
9	chr5:44811000-44829400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:44811200-44835400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr5:44811400-44838400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:44812400-44825800	Weak transcription	Fetal Brain Male	brain
13	chr5:44814200-44825800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:44814200-44829400	Weak transcription	Brain Germinal Matrix	brain
15	chr5:44814800-44839200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr5:44815000-44826200	Weak transcription	Brain Angular Gyrus	brain
17	chr5:44815000-44832800	Weak transcription	Brain Hippocampus Middle	brain
18	chr5:44815400-44826000	Weak transcription	Brain Substantia Nigra	brain
19	chr5:44815400-44830800	Weak transcription	Fetal Heart	heart
20	chr5:44815800-44827600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr5:44816000-44827600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr5:44816000-44836400	Weak transcription	Ovary	ovary
23	chr5:44816200-44826800	Weak transcription	HUVEC	blood vessel
24	chr5:44816600-44826000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr5:44816600-44829200	Weak transcription	NHDF-Ad	bronchial
26	chr5:44816600-44831400	Weak transcription	Small Intestine	intestine
27	chr5:44817200-44833600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr5:44817200-44839200	Weak transcription	Brain Anterior Caudate	brain
29	chr5:44817400-44827400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr5:44817800-44839200	Weak transcription	Left Ventricle	heart
31	chr5:44818200-44830200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr5:44818800-44831800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr5:44819000-44831400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr5:44819000-44839200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr5:44819400-44826200	Weak transcription	Fetal Brain Female	brain
36	chr5:44819400-44838200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr5:44819800-44830000	Weak transcription	Adipose Nuclei	Adipose
38	chr5:44820000-44828400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr5:44820400-44832200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr5:44820600-44829800	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr5:44820800-44828400	Weak transcription	Primary B cells from peripheral blood	blood
42	chr5:44821000-44826000	Weak transcription	Fetal Thymus	thymus
43	chr5:44821400-44829600	Weak transcription	Fetal Intestine Large	intestine
44	chr5:44822200-44826000	Weak transcription	HSMM	muscle
45	chr5:44822200-44831600	Weak transcription	NHEK	skin
46	chr5:44822400-44827400	Weak transcription	Primary T cells from cord blood	blood
47	chr5:44822400-44838400	Weak transcription	Liver	Liver
48	chr5:44822600-44826000	Weak transcription	Fetal Stomach	stomach
49	chr5:44822600-44828600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr5:44822600-44830400	Weak transcription	Dnd41	blood

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