Variant report

Variant	rs13167875
Chromosome Location	chr5:79417700-79417701
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79417050..79419416-chr5:79551454..79553620,2	K562	blood:

Variant related genes	Relation type
ENSG00000164300	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11950944	0.83[ASN][1000 genomes]
rs12523350	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1863959	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2028270	0.83[ASN][1000 genomes]
rs4703798	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4704611	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4704613	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4704614	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6867810	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv598744	chr5:79388745-79423347	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79406200-79421000	Weak transcription	Right Ventricle	heart
2	chr5:79407400-79424000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:79409800-79420800	Weak transcription	Thymus	Thymus
4	chr5:79410000-79430800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:79412600-79424200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:79413400-79419600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr5:79413600-79420600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr5:79413800-79418200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr5:79413800-79418600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr5:79413800-79418800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr5:79413800-79419000	Weak transcription	Primary T cells from cord blood	blood
12	chr5:79414000-79420000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr5:79414800-79420400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr5:79415000-79419600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr5:79415400-79418200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr5:79415400-79419800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr5:79415600-79418200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:79415600-79420600	Weak transcription	Brain Anterior Caudate	brain
19	chr5:79415800-79419400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr5:79417000-79417800	ZNF genes & repeats	Fetal Thymus	thymus
21	chr5:79417000-79437000	Weak transcription	Pancreas	Pancrea
22	chr5:79417400-79425400	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr5:79417400-79430400	Weak transcription	Dnd41	blood
24	chr5:79417600-79418000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr5:79417600-79418400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr5:79417600-79420600	Weak transcription	Fetal Intestine Small	intestine
27	chr5:79417600-79421800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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