Variant report

Variant	rs13168126
Chromosome Location	chr5:112477506-112477507
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112476798..112478381-chr5:112478430..112480202,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10463646	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11950615	0.81[AMR][1000 genomes]
rs12187866	0.85[CEU][hapmap]
rs13156718	0.89[CEU][hapmap]
rs13170088	0.83[AMR][1000 genomes]
rs13183116	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13183472	0.84[CEU][hapmap]
rs13190040	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13190424	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1562016	0.83[ASN][1000 genomes]
rs2044238	0.85[CEU][hapmap];0.90[CHB][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2044239	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2165930	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2416303	0.84[CEU][hapmap];0.90[CHB][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2416305	0.90[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2416306	0.84[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs35334140	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3922585	0.92[CEU][hapmap];0.81[AMR][1000 genomes]
rs4705542	0.80[CEU][hapmap]
rs4705543	0.88[CEU][hapmap]
rs4705546	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4705778	0.84[CEU][hapmap]
rs4705782	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4705789	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4705794	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4705795	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4705796	0.90[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs4705797	0.96[CEU][hapmap];0.94[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6883605	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7707546	0.85[ASN][1000 genomes]
rs7720549	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7720866	0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7726679	0.96[CEU][hapmap];0.84[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs935159	0.84[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112451000-112478800	Weak transcription	Aorta	Aorta
2	chr5:112467400-112493200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:112470200-112491000	Weak transcription	Fetal Kidney	kidney
4	chr5:112470600-112482000	Weak transcription	Fetal Heart	heart
5	chr5:112474800-112482400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:112475600-112479200	Strong transcription	Liver	Liver
7	chr5:112475800-112479600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:112476200-112477600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:112476200-112478400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:112476200-112478400	Enhancers	NHDF-Ad	bronchial
11	chr5:112476200-112479400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr5:112476400-112477600	Enhancers	Brain Substantia Nigra	brain
13	chr5:112476400-112478000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr5:112476400-112478000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr5:112476400-112478000	Enhancers	Left Ventricle	heart
16	chr5:112476400-112478200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:112476400-112478200	Enhancers	HSMMtube	muscle
18	chr5:112476400-112478600	Enhancers	Osteobl	bone
19	chr5:112476600-112477600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:112476600-112477600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:112476600-112477800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:112476600-112478000	Enhancers	Brain Hippocampus Middle	brain
23	chr5:112476600-112478000	Enhancers	NH-A	brain
24	chr5:112476600-112478600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:112476600-112478600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr5:112476600-112478800	Enhancers	HMEC	breast
27	chr5:112476600-112478800	Genic enhancers	NHEK	skin
28	chr5:112476800-112477600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr5:112476800-112478000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr5:112476800-112478400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr5:112476800-112478800	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr5:112476800-112478800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr5:112476800-112478800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr5:112476800-112479800	Weak transcription	Right Ventricle	heart
35	chr5:112477000-112477600	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr5:112477000-112477800	Enhancers	H1 Cell Line	embryonic stem cell
37	chr5:112477000-112478600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr5:112477000-112483200	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr5:112477200-112477600	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr5:112477200-112483200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr5:112477200-112485400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr5:112477400-112477600	Weak transcription	Ovary	ovary
43	chr5:112477400-112477800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr5:112477400-112478000	Weak transcription	Esophagus	oesophagus
45	chr5:112477400-112478600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr5:112477400-112478600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr5:112477400-112481400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr5:112477400-112482000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr5:112477400-112482400	Weak transcription	Adipose Nuclei	Adipose
50	chr5:112477400-112482600	Weak transcription	NHLF	lung

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