Variant report

Variant	rs13169376
Chromosome Location	chr5:42364260-42364261
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12513643	0.92[EUR][1000 genomes]
rs12517931	0.92[EUR][1000 genomes]
rs12520318	0.92[EUR][1000 genomes]
rs13153060	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13180731	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34126503	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34161441	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34305870	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34714947	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35331831	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35585211	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3764453	0.90[EUR][1000 genomes]
rs67314897	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67846180	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6885716	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6891036	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72753062	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72753064	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7716495	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv880518	chr5:42231896-42375243	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv881375	chr5:42254097-42442715	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv948514	chr5:42270161-42519262	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42361400-42366800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:42361600-42366400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:42362200-42366200	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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