Variant report

Variant	rs13171177
Chromosome Location	chr5:44947273-44947274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11951477	0.83[ASN][1000 genomes]
rs11957933	0.83[ASN][1000 genomes]
rs13183825	0.83[ASN][1000 genomes]
rs16901954	0.83[ASN][1000 genomes]
rs57288883	0.83[ASN][1000 genomes]
rs6451785	0.83[ASN][1000 genomes]
rs6877331	0.83[ASN][1000 genomes]
rs6877454	0.83[ASN][1000 genomes]
rs6891637	0.83[ASN][1000 genomes]
rs6893211	0.83[ASN][1000 genomes]
rs7704815	0.83[ASN][1000 genomes]
rs7736197	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027897	chr5:44695278-45061623	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv880483	chr5:44827292-45038026	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44946000-44948400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:44946200-44949600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:44946400-44947400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:44946400-44951800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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