Variant report

Variant	rs13171548
Chromosome Location	chr5:177055165-177055166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73804378	1.00[AFR][1000 genomes]
rs73804379	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916108	chr5:176688459-177078723	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
2	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
3	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
4	nsv883182	chr5:176980995-177322056	Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv964980	chr5:177052123-177057222	Weak transcription Strong transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177037000-177055200	Weak transcription	NHLF	lung
2	chr5:177044400-177061800	Weak transcription	Small Intestine	intestine
3	chr5:177046400-177055200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:177046400-177058800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:177046600-177068400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:177046600-177069200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:177046600-177069600	Weak transcription	Esophagus	oesophagus
8	chr5:177046800-177058800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:177046800-177060200	Weak transcription	Brain Angular Gyrus	brain
10	chr5:177046800-177060800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:177046800-177065800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:177046800-177084000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr5:177047000-177055600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr5:177047000-177057200	Weak transcription	NHDF-Ad	bronchial
15	chr5:177047000-177058800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:177047000-177079000	Weak transcription	Colon Smooth Muscle	Colon
17	chr5:177047200-177055200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr5:177047200-177055800	Weak transcription	Colonic Mucosa	Colon
19	chr5:177047200-177060200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:177047200-177061000	Weak transcription	Brain Hippocampus Middle	brain
21	chr5:177047200-177064000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr5:177047200-177070800	Weak transcription	Pancreas	Pancrea
23	chr5:177047400-177055600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr5:177047400-177059600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:177047400-177075000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:177047800-177055200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr5:177047800-177057400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr5:177047800-177059400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr5:177047800-177059400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr5:177047800-177060400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr5:177047800-177068200	Weak transcription	Fetal Intestine Large	intestine
32	chr5:177047800-177069000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr5:177047800-177080200	Weak transcription	Primary B cells from cord blood	blood
34	chr5:177048000-177061200	Weak transcription	Brain Germinal Matrix	brain
35	chr5:177048000-177069000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr5:177048400-177058800	Weak transcription	Thymus	Thymus
37	chr5:177048400-177066800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr5:177048800-177063200	Weak transcription	Fetal Brain Female	brain
39	chr5:177048800-177083600	Weak transcription	Fetal Lung	lung
40	chr5:177049000-177055600	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr5:177049400-177055600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr5:177049400-177060800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr5:177050000-177058800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr5:177051600-177069000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr5:177051800-177057200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr5:177051800-177058800	Weak transcription	Aorta	Aorta
47	chr5:177051800-177058800	Weak transcription	Lung	lung
48	chr5:177051800-177080200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr5:177052000-177055600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr5:177052000-177083200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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