Variant report

Variant	rs1317361
Chromosome Location	chr10:90879304-90879305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10887910	0.89[ASN][1000 genomes]
rs10887911	0.89[ASN][1000 genomes]
rs10887912	0.90[ASN][1000 genomes]
rs11202952	0.91[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap]
rs11202953	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11202958	0.85[ASN][1000 genomes]
rs11202961	0.85[ASN][1000 genomes]
rs11202964	0.86[ASN][1000 genomes]
rs11202972	0.86[ASN][1000 genomes]
rs11202979	0.88[ASN][1000 genomes]
rs11202983	0.89[ASN][1000 genomes]
rs11202989	0.90[ASN][1000 genomes]
rs12218492	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1937337	0.84[CEU][hapmap]
rs2211596	0.85[ASN][1000 genomes]
rs2211597	0.85[ASN][1000 genomes]
rs2226246	0.90[ASN][1000 genomes]
rs4934441	0.85[ASN][1000 genomes]
rs4934443	0.89[ASN][1000 genomes]
rs4934444	0.90[ASN][1000 genomes]
rs4934449	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs7100691	0.90[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv467416	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv551842	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv831944	chr10:90822654-90967018	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv895881	chr10:90842431-90940003	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
10	nsv551844	chr10:90879304-90899444	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1317361	IFIT5	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90874600-90879400	Weak transcription	Adipose Nuclei	Adipose
2	chr10:90876200-90883200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:90876600-90882200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:90878400-90879400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:90878400-90880600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:90878400-90889600	Weak transcription	NHLF	lung
7	chr10:90878600-90879600	Weak transcription	HSMMtube	muscle
8	chr10:90878600-90880400	Weak transcription	NHDF-Ad	bronchial
9	chr10:90878600-90880600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:90878600-90880600	Weak transcription	Osteobl	bone
11	chr10:90878600-90888000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:90878800-90882200	Weak transcription	NHEK	skin
13	chr10:90878800-90888000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:90879200-90879800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:90879200-90879800	Enhancers	HUVEC	blood vessel
16	chr10:90879200-90880000	Enhancers	HSMM	muscle
17	chr10:90879200-90881400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:90879200-90882000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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