Variant report

Variant	rs13174214
Chromosome Location	chr5:178332954-178332955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs71611478	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178323600-178335400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr5:178323800-178333800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr5:178323800-178336200	Weak transcription	Right Ventricle	heart
4	chr5:178323800-178336400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr5:178328000-178334400	Weak transcription	Psoas Muscle	Psoas
6	chr5:178332400-178333400	ZNF genes & repeats	Fetal Brain Female	brain
7	chr5:178332400-178333400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
8	chr5:178332400-178334600	ZNF genes & repeats	Liver	Liver
9	chr5:178332600-178333400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:178332600-178333400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:178332800-178333000	Strong transcription	Brain Angular Gyrus	brain
12	chr5:178332800-178333000	Strong transcription	Rectal Smooth Muscle	rectum
13	chr5:178332800-178333000	Strong transcription	Skeletal Muscle Male	skeletal muscle
14	chr5:178332800-178333000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
15	chr5:178332800-178333200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:178332800-178333200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:178332800-178333200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:178332800-178333200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:178332800-178333200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:178332800-178333200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:178332800-178333200	ZNF genes & repeats	Aorta	Aorta
22	chr5:178332800-178333200	ZNF genes & repeats	Brain Germinal Matrix	brain
23	chr5:178332800-178333200	ZNF genes & repeats	Colonic Mucosa	Colon
24	chr5:178332800-178333200	ZNF genes & repeats	Colon Smooth Muscle	Colon
25	chr5:178332800-178333200	ZNF genes & repeats	Esophagus	oesophagus
26	chr5:178332800-178333200	ZNF genes & repeats	Fetal Intestine Small	intestine
27	chr5:178332800-178333200	ZNF genes & repeats	Fetal Muscle Leg	muscle
28	chr5:178332800-178333200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
29	chr5:178332800-178333200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
30	chr5:178332800-178333400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
31	chr5:178332800-178333400	ZNF genes & repeats	Primary T cells from cord blood	blood
32	chr5:178332800-178333400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr5:178332800-178333400	ZNF genes & repeats	Adipose Nuclei	Adipose
34	chr5:178332800-178333400	ZNF genes & repeats	Brain Anterior Caudate	brain
35	chr5:178332800-178333400	Strong transcription	Brain Cingulate Gyrus	brain
36	chr5:178332800-178333400	ZNF genes & repeats	Brain Hippocampus Middle	brain
37	chr5:178332800-178333400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
38	chr5:178332800-178333400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
39	chr5:178332800-178333400	ZNF genes & repeats	Brain Substantia Nigra	brain
40	chr5:178332800-178333400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
41	chr5:178332800-178333400	ZNF genes & repeats	Fetal Lung	lung
42	chr5:178332800-178333400	ZNF genes & repeats	Placenta	Placenta
43	chr5:178332800-178333400	ZNF genes & repeats	Gastric	stomach
44	chr5:178332800-178333400	Strong transcription	Left Ventricle	heart
45	chr5:178332800-178333400	ZNF genes & repeats	Pancreas	Pancrea
46	chr5:178332800-178334200	ZNF genes & repeats	Fetal Stomach	stomach
47	chr5:178332800-178334200	ZNF genes & repeats	Ovary	ovary
48	chr5:178332800-178334400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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