Variant report
| Variant | rs13175573 |
|---|---|
| Chromosome Location | chr5:50297517-50297518 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10064446 | 0.83[CEU][hapmap] |
| rs10805506 | 0.83[ASN][1000 genomes] |
| rs10940613 | 0.88[ASN][1000 genomes] |
| rs12657116 | 0.84[ASN][1000 genomes] |
| rs12659587 | 0.92[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[MKK][hapmap];0.83[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13177246 | 0.88[ASN][1000 genomes] |
| rs1423227 | 0.86[ASN][1000 genomes] |
| rs1545350 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17220801 | 0.83[CEU][hapmap] |
| rs2289879 | 0.93[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs2289880 | 0.93[CHB][hapmap];0.92[JPT][hapmap];0.83[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs250216 | 0.88[ASN][1000 genomes] |
| rs250238 | 0.92[JPT][hapmap] |
| rs35192063 | 0.88[ASN][1000 genomes] |
| rs35477295 | 0.83[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs35894462 | 0.88[ASN][1000 genomes] |
| rs3843453 | 0.92[JPT][hapmap] |
| rs4866019 | 0.92[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[MKK][hapmap];0.83[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4866020 | 0.83[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs66947818 | 0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1034445 | chr5:49986171-50492609 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv598116 | chr5:50064292-50318550 | Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv830286 | chr5:50165805-50374600 | Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv1018897 | chr5:50284474-50344007 | Enhancers Active TSS Weak transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv537762 | chr5:50284474-50344007 | Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:50297400-50298400 | Enhancers | Pancreatic Islets | Pancreatic Islet |
