Variant report

Variant	rs13176625
Chromosome Location	chr5:79462522-79462523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79462247..79466170-chr5:79549724..79555274,4	MCF-7	breast:
2	chr5:79461273..79462847-chr5:79470957..79473360,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164300	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4703803	1.00[JPT][hapmap]
rs4704617	1.00[JPT][hapmap]
rs4704619	1.00[JPT][hapmap]
rs6891705	1.00[JPT][hapmap]
rs7704169	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79433600-79476600	Weak transcription	Small Intestine	intestine
2	chr5:79437600-79464000	Weak transcription	Spleen	Spleen
3	chr5:79437800-79471400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:79438600-79482600	Weak transcription	Psoas Muscle	Psoas
5	chr5:79440200-79468200	Weak transcription	NHDF-Ad	bronchial
6	chr5:79442000-79487600	Weak transcription	NH-A	brain
7	chr5:79444000-79476800	Weak transcription	Colonic Mucosa	Colon
8	chr5:79444600-79465600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:79445800-79464600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:79446200-79464600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:79446200-79465200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:79448000-79464600	Weak transcription	Gastric	stomach
13	chr5:79448200-79466400	Weak transcription	Aorta	Aorta
14	chr5:79448400-79464800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr5:79449400-79464200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr5:79449800-79471400	Strong transcription	Dnd41	blood
17	chr5:79450000-79464200	Weak transcription	Colon Smooth Muscle	Colon
18	chr5:79450000-79464600	Weak transcription	Right Ventricle	heart
19	chr5:79450000-79464800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr5:79450000-79464800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr5:79450000-79466200	Strong transcription	Fetal Thymus	thymus
22	chr5:79450000-79469800	Weak transcription	HSMMtube	muscle
23	chr5:79450000-79477200	Weak transcription	HMEC	breast
24	chr5:79450000-79477600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr5:79450400-79471200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr5:79450400-79472800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr5:79450800-79473800	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr5:79452000-79464400	Strong transcription	Placenta	Placenta
29	chr5:79452400-79468800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:79452400-79470600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:79454800-79472800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr5:79455200-79464600	Weak transcription	Pancreas	Pancrea
33	chr5:79455200-79464800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr5:79455600-79465000	Weak transcription	Lung	lung
35	chr5:79455800-79466000	Weak transcription	Fetal Heart	heart
36	chr5:79456000-79468800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr5:79456200-79463600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr5:79456200-79464600	Weak transcription	Brain Angular Gyrus	brain
39	chr5:79456400-79464400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr5:79456400-79468600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr5:79456600-79464200	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr5:79456600-79468600	Weak transcription	HSMM	muscle
43	chr5:79456600-79469800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr5:79457000-79469600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr5:79458000-79463400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr5:79458000-79466800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr5:79458000-79469600	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr5:79458200-79465000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr5:79458400-79463400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr5:79458400-79464400	Weak transcription	Brain Germinal Matrix	brain

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