Variant report

Variant	rs13176829
Chromosome Location	chr5:107414912-107414913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55980663	0.82[EUR][1000 genomes]
rs6889824	1.00[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs72798138	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72798146	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7710101	0.84[EUR][1000 genomes]
rs7712712	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107403800-107429800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:107410200-107415400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:107411000-107415600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:107411600-107416000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:107412200-107418000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:107412200-107420600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:107412600-107415000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:107412600-107416000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr5:107413600-107418400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr5:107414000-107415400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:107414000-107415400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:107414200-107415600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr5:107414400-107415000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:107414600-107415400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr5:107414600-107415800	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr5:107414600-107416000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:107414600-107416000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr5:107414600-107416200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:107414600-107419000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:107414800-107415600	Weak transcription	Adipose Nuclei	Adipose
22	chr5:107414800-107427800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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