Variant report

Variant	rs13177026
Chromosome Location	chr5:14315510-14315511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14266100..14268810-chr5:14315325..14317635,2	K562	blood:
2	chr5:14309077..14311493-chr5:14313266..14316028,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17302408	0.83[AFR][1000 genomes]
rs17303923	0.82[AFR][1000 genomes]
rs34045422	0.93[AMR][1000 genomes]
rs4702028	0.82[AFR][1000 genomes]
rs71614082	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948355	chr5:14160447-14395478	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv830210	chr5:14255039-14431552	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2421652	chr5:14312802-14316381	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv442938	chr5:14312802-14316381	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14278000-14341200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:14283000-14319400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:14286200-14320400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:14286400-14321000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:14288000-14324000	Strong transcription	Primary B cells from peripheral blood	blood
6	chr5:14290800-14321200	Strong transcription	Primary B cells from cord blood	blood
7	chr5:14291400-14316600	Weak transcription	Thymus	Thymus
8	chr5:14297800-14316600	Weak transcription	Brain Substantia Nigra	brain
9	chr5:14298000-14316600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:14298000-14316600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr5:14300000-14316800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:14303800-14323600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:14304000-14323800	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr5:14304200-14319400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr5:14304200-14321800	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:14305400-14326800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:14305600-14316400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:14305600-14316600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr5:14305600-14316600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr5:14305600-14317600	Strong transcription	HUVEC	blood vessel
21	chr5:14305600-14321200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr5:14306800-14316400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:14307000-14316400	Weak transcription	Brain Hippocampus Middle	brain
24	chr5:14307600-14316600	Weak transcription	Brain Angular Gyrus	brain
25	chr5:14307600-14316800	Weak transcription	Primary T cells from cord blood	blood
26	chr5:14307600-14321400	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr5:14307600-14321400	Strong transcription	NH-A	brain
28	chr5:14307800-14316400	Weak transcription	Esophagus	oesophagus
29	chr5:14308600-14316400	Weak transcription	Ovary	ovary
30	chr5:14309000-14316200	Weak transcription	Fetal Kidney	kidney
31	chr5:14309200-14321200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr5:14309600-14326600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr5:14310000-14316400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr5:14310200-14322200	Weak transcription	Fetal Brain Male	brain
35	chr5:14310400-14318800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr5:14310400-14342000	Weak transcription	Stomach Mucosa	stomach
37	chr5:14310600-14316400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr5:14310600-14344600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr5:14311200-14316600	Weak transcription	Gastric	stomach
40	chr5:14312000-14315800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr5:14312000-14316400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr5:14312000-14316400	Weak transcription	Fetal Intestine Small	intestine
43	chr5:14312000-14316600	Weak transcription	Brain Anterior Caudate	brain
44	chr5:14312000-14316600	Weak transcription	Brain Germinal Matrix	brain
45	chr5:14312000-14316600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr5:14312200-14316400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr5:14312200-14316400	Weak transcription	Fetal Lung	lung
48	chr5:14312200-14316400	Weak transcription	Spleen	Spleen
49	chr5:14312200-14316600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr5:14312400-14316400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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