Variant report

Variant	rs13177824
Chromosome Location	chr5:108553163-108553164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10900654	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11240993	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11240994	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11240995	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12519222	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12519256	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12521907	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12658656	0.81[AMR][1000 genomes]
rs13157564	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13157740	0.90[AMR][1000 genomes]
rs13159083	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13163803	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13176379	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13181049	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4320311	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4342372	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4367335	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4409140	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4463211	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4645373	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56318800	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58026852	0.84[AMR][1000 genomes]
rs59383615	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60461520	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61370545	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62376809	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6594356	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6594358	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6863496	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6877385	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6882037	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6888581	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6891602	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6895606	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6895876	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7719087	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7719276	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7719474	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7719604	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv17811	chr5:108537620-108555452	ZNF genes & repeats Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
4	esv3440012	chr5:108553027-108553448	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108551400-108554000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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