Variant report

Variant	rs13178009
Chromosome Location	chr5:96365469-96365470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96363615..96366416-chr5:96368478..96370655,4	K562	blood:
2	chr5:96360368..96362790-chr5:96362902..96365710,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LIX1-1	chr5:96365384-96367586	ENSG00000249716

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13171667	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv948703	chr5:96078309-96368839	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1028741	chr5:96082401-96372165	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv949058	chr5:96082433-96390619	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96315400-96374800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:96333600-96374000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:96333800-96372800	Strong transcription	Placenta	Placenta
4	chr5:96342600-96374400	Weak transcription	HepG2	liver
5	chr5:96346600-96372600	Strong transcription	Primary B cells from peripheral blood	blood
6	chr5:96347000-96373600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr5:96348400-96372400	Strong transcription	Fetal Thymus	thymus
8	chr5:96348400-96374600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr5:96348600-96366000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:96351400-96379000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:96352200-96372600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr5:96355800-96372200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:96356000-96366400	Weak transcription	A549	lung
14	chr5:96357800-96373800	Strong transcription	Adipose Nuclei	Adipose
15	chr5:96358000-96365600	Strong transcription	Duodenum Mucosa	Duodenum
16	chr5:96358000-96365800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:96358000-96367400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:96358000-96367800	Strong transcription	Fetal Intestine Large	intestine
19	chr5:96358000-96368200	Strong transcription	Liver	Liver
20	chr5:96358000-96372800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr5:96358000-96373000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr5:96358200-96372400	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr5:96358200-96372400	Strong transcription	Dnd41	blood
24	chr5:96358400-96367400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr5:96358600-96367400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr5:96358800-96367400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
27	chr5:96358800-96369000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:96358800-96372400	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr5:96358800-96374000	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr5:96359000-96367200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr5:96359000-96370400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr5:96359000-96373400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr5:96359000-96373600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr5:96359200-96365600	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr5:96359200-96365600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
36	chr5:96359200-96365800	Strong transcription	Primary T cells from cord blood	blood
37	chr5:96359200-96366000	Strong transcription	GM12878-XiMat	blood
38	chr5:96359200-96372400	Strong transcription	Primary B cells from cord blood	blood
39	chr5:96359200-96373800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr5:96359400-96366600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr5:96359400-96369200	Strong transcription	Primary hematopoietic stem cells	blood
42	chr5:96359800-96367000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr5:96360400-96369000	Weak transcription	NHLF	lung
44	chr5:96360400-96371600	Weak transcription	Hela-S3	cervix
45	chr5:96360600-96378600	Weak transcription	Gastric	stomach
46	chr5:96360800-96366400	Weak transcription	HSMMtube	muscle
47	chr5:96360800-96374400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr5:96360800-96379400	Weak transcription	Psoas Muscle	Psoas
49	chr5:96361000-96374600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr5:96361000-96378000	Weak transcription	Aorta	Aorta

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