Variant report

Variant	rs13178695
Chromosome Location	chr5:80689953-80689954
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10038566	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7728156	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80688600-80690000	Active TSS	Liver	Liver
2	chr5:80689200-80690000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:80689200-80690000	Active TSS	Right Ventricle	heart
4	chr5:80689200-80690200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:80689200-80690400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:80689200-80690400	Bivalent Enhancer	Fetal Thymus	thymus
7	chr5:80689200-80690400	Enhancers	Spleen	Spleen
8	chr5:80689200-80690400	Active TSS	A549	lung
9	chr5:80689200-80690400	Active TSS	NHLF	lung
10	chr5:80689200-80690600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr5:80689200-80690600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
12	chr5:80689200-80690600	Active TSS	H9 Cell Line	embryonic stem cell
13	chr5:80689200-80690600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
14	chr5:80689200-80690600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr5:80689200-80690600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr5:80689200-80690600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
17	chr5:80689200-80690600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
18	chr5:80689200-80690600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
19	chr5:80689200-80690600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr5:80689200-80690600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr5:80689200-80690600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr5:80689200-80690600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
23	chr5:80689200-80690600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
24	chr5:80689200-80690600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:80689200-80690600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:80689200-80690600	Active TSS	Osteobl	bone
27	chr5:80689400-80690000	Active TSS	Fetal Brain Female	brain
28	chr5:80689400-80690000	Enhancers	Placenta	Placenta
29	chr5:80689400-80690200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
30	chr5:80689400-80690200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr5:80689400-80690200	Enhancers	Lung	lung
32	chr5:80689400-80690200	Active TSS	HUVEC	blood vessel
33	chr5:80689400-80690200	Active TSS	NHEK	skin
34	chr5:80689400-80690400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr5:80689400-80690400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr5:80689400-80690400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
37	chr5:80689400-80690400	Enhancers	Gastric	stomach
38	chr5:80689400-80690600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr5:80689400-80690600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr5:80689400-80690600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
41	chr5:80689400-80690600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
42	chr5:80689400-80690600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
43	chr5:80689400-80690600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:80689400-80690600	Active TSS	Muscle Satellite Cultured Cells	--
45	chr5:80689400-80690600	Active TSS	Aorta	Aorta
46	chr5:80689400-80690600	Active TSS	Brain Angular Gyrus	brain
47	chr5:80689400-80690600	Active TSS	Brain Anterior Caudate	brain
48	chr5:80689400-80690600	Bivalent/Poised TSS	Colonic Mucosa	Colon
49	chr5:80689400-80690600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
50	chr5:80689400-80690600	Active TSS	Pancreatic Islets	Pancreatic Islet

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