Variant report

Variant	rs13180905
Chromosome Location	chr5:54047476-54047477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:54044930..54047645-chr5:54048300..54051015,2	K562	blood:
2	chr5:54037843..54041857-chr5:54043536..54048349,6	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10077227	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10077228	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10940420	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10940421	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11741898	0.98[ASN][1000 genomes]
rs12520102	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1445837	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445838	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445839	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867687	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35207106	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4242043	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4367251	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4367252	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4367253	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4410612	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4419552	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4487449	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4541609	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4596333	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4639171	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4639172	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6872707	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881842	0.97[ASN][1000 genomes]
rs6899028	0.99[ASN][1000 genomes]
rs7701622	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7710924	0.82[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs7735360	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7735378	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7736184	0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs895329	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9292068	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54040600-54050000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:54040600-54052400	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:54041200-54051800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:54041400-54048600	Weak transcription	HSMMtube	muscle
5	chr5:54041600-54048800	Weak transcription	NHLF	lung
6	chr5:54041800-54048800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:54041800-54048800	Weak transcription	Fetal Heart	heart
8	chr5:54041800-54052000	Weak transcription	Placenta	Placenta
9	chr5:54041800-54052200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:54042600-54053800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:54044800-54051800	Weak transcription	K562	blood
12	chr5:54044800-54056000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:54047200-54047600	Weak transcription	Primary B cells from cord blood	blood
14	chr5:54047400-54047600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:54047400-54047600	Enhancers	Right Atrium	heart
16	chr5:54047400-54047800	Enhancers	NHDF-Ad	bronchial
17	chr5:54047400-54049000	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links