Variant report

Variant	rs13184341
Chromosome Location	chr5:42511349-42511350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28943884	1.00[AFR][1000 genomes]
rs28943886	1.00[AFR][1000 genomes]
rs34318679	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34442254	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv948514	chr5:42270161-42519262	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020464	chr5:42488628-42699394	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1018751	chr5:42491883-42697923	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42498600-42514800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:42508000-42516600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:42508200-42511400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr5:42508200-42514200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:42508200-42515200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:42508400-42513600	Weak transcription	Left Ventricle	heart
7	chr5:42508400-42514200	Weak transcription	Right Atrium	heart
8	chr5:42508400-42514600	Weak transcription	Fetal Muscle Leg	muscle
9	chr5:42508400-42514800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:42508600-42514600	Weak transcription	Adipose Nuclei	Adipose
11	chr5:42509600-42516600	Weak transcription	Fetal Stomach	stomach
12	chr5:42509800-42513200	Weak transcription	Fetal Lung	lung
13	chr5:42510200-42512000	Weak transcription	Liver	Liver
14	chr5:42510400-42516400	Weak transcription	Right Ventricle	heart
15	chr5:42510600-42514200	Weak transcription	Fetal Heart	heart
16	chr5:42510800-42511400	Enhancers	Psoas Muscle	Psoas
17	chr5:42511000-42513400	Weak transcription	Ovary	ovary
18	chr5:42511200-42512200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr5:42511200-42514800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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