Variant report

Variant	rs13184495
Chromosome Location	chr5:94191436-94191437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94190382..94191968-chr5:94194901..94196604,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10515218	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823144	chr5:94172237-94212534	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:94163800-94209800	Weak transcription	Dnd41	blood
3	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:94165800-94206200	Weak transcription	Adipose Nuclei	Adipose
5	chr5:94175600-94194600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:94181200-94209400	Weak transcription	GM12878-XiMat	blood
7	chr5:94183200-94206400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:94183800-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:94186000-94200400	Weak transcription	Primary T cells from cord blood	blood
10	chr5:94186200-94194000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:94186400-94208000	Weak transcription	Fetal Thymus	thymus
12	chr5:94189000-94192000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr5:94189000-94193000	Strong transcription	HUVEC	blood vessel
14	chr5:94189800-94192200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr5:94189800-94199400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:94190200-94192400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr5:94190200-94196000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:94191000-94191600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:94191000-94191600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:94191000-94232200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr5:94191400-94191600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr5:94191400-94199000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr5:94191400-94199200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links