Variant report

Variant	rs13185029
Chromosome Location	chr5:145208623-145208624
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:145207703..145209217-chr5:145264749..145267646,2	K562	blood:
2	chr5:145207820..145210884-chr5:145212299..145217868,7	K562	blood:
3	chr5:145206512..145209895-chr5:145210961..145215368,4	MCF-7	breast:
4	chr5:145207166..145210517-chr5:145212091..145218293,8	K562	blood:
5	chr5:145191897..145193671-chr5:145207985..145210429,2	MCF-7	breast:
6	chr2:58199993..58202992-chr5:145207291..145209292,2	K562	blood:

Variant related genes	Relation type
ENSG00000186314	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12655088	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12656905	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12658465	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13155845	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13172860	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13189114	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1432781	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17103810	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34598208	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34770524	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34811451	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59502278	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145162800-145212800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr5:145170600-145213400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:145172800-145214200	Weak transcription	Right Ventricle	heart
4	chr5:145174200-145209200	Weak transcription	Colon Smooth Muscle	Colon
5	chr5:145177200-145209000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:145177200-145209200	Weak transcription	NH-A	brain
7	chr5:145177400-145209000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:145179400-145209400	Weak transcription	Stomach Mucosa	stomach
9	chr5:145183600-145214000	Weak transcription	Fetal Kidney	kidney
10	chr5:145187000-145209200	Weak transcription	A549	lung
11	chr5:145192800-145209200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:145194800-145209000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:145195200-145212800	Weak transcription	Colonic Mucosa	Colon
14	chr5:145196200-145211800	Weak transcription	Gastric	stomach
15	chr5:145196800-145214000	Weak transcription	Fetal Stomach	stomach
16	chr5:145197800-145209200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr5:145198000-145213600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr5:145198200-145210200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr5:145198800-145209000	Weak transcription	Ovary	ovary
20	chr5:145198800-145212000	Weak transcription	Aorta	Aorta
21	chr5:145201400-145209400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr5:145201400-145214200	Weak transcription	Lung	lung
23	chr5:145201800-145210400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr5:145202000-145209000	Weak transcription	HUVEC	blood vessel
25	chr5:145204000-145208800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr5:145204000-145209200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr5:145204000-145209600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:145204200-145209000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:145204200-145209000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr5:145204200-145209200	Weak transcription	Fetal Lung	lung
31	chr5:145204200-145209600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr5:145205400-145209400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr5:145206000-145209000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr5:145207200-145214200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr5:145207400-145209000	Weak transcription	Liver	Liver
36	chr5:145207400-145209000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr5:145207400-145209000	Weak transcription	Fetal Intestine Large	intestine
38	chr5:145207400-145209000	Weak transcription	Small Intestine	intestine
39	chr5:145207400-145209000	Weak transcription	HepG2	liver
40	chr5:145207400-145212600	Weak transcription	Fetal Intestine Small	intestine
41	chr5:145207400-145212800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr5:145207400-145213800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr5:145207400-145214000	Weak transcription	NHEK	skin
44	chr5:145207600-145209200	Weak transcription	K562	blood
45	chr5:145208000-145209000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr5:145208400-145213600	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr5:145208600-145209400	Enhancers	Pancreas	Pancrea
48	chr5:145208600-145209800	Enhancers	Fetal Heart	heart

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