Variant report

Variant	rs13186590
Chromosome Location	chr5:106867556-106867557
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13172140	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs163764	0.86[EUR][1000 genomes]
rs35131340	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106842400-106880000	Weak transcription	Gastric	stomach
2	chr5:106856000-106868600	Weak transcription	Right Ventricle	heart
3	chr5:106857400-106868000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:106859600-106873600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:106860600-106874600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:106862400-106868000	Weak transcription	HSMMtube	muscle
7	chr5:106862400-106873800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:106862800-106867800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:106862800-106868000	Weak transcription	HSMM	muscle
10	chr5:106864600-106867600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:106865200-106868400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr5:106865400-106880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:106865600-106867800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:106865600-106874200	Weak transcription	Aorta	Aorta
15	chr5:106865800-106867800	Weak transcription	A549	lung
16	chr5:106865800-106874800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr5:106866200-106868000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:106866200-106874400	Weak transcription	Left Ventricle	heart
19	chr5:106866400-106867600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:106866600-106867800	Weak transcription	Fetal Heart	heart
21	chr5:106866800-106868000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:106866800-106871600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr5:106867000-106870400	Enhancers	Fetal Kidney	kidney
24	chr5:106867000-106875600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr5:106867200-106867600	Enhancers	Placenta Amnion	Placenta Amnion
26	chr5:106867200-106868400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr5:106867200-106868400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr5:106867200-106869800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr5:106867200-106871600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr5:106867200-106879800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:106867400-106867800	Weak transcription	Right Atrium	heart
32	chr5:106867400-106868200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr5:106867400-106871400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:106867400-106874600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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