Variant report

Variant	rs13189620
Chromosome Location	chr5:36591331-36591332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs71617757	1.00[ASN][1000 genomes]
rs71617761	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv881025	chr5:36575021-36613053	Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
3	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36587800-36591400	Weak transcription	Left Ventricle	heart
2	chr5:36589600-36591600	Weak transcription	Right Atrium	heart
3	chr5:36590400-36591800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:36590600-36591400	Enhancers	Brain Anterior Caudate	brain
5	chr5:36590600-36591800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr5:36590600-36591800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:36590600-36591800	Enhancers	Brain Substantia Nigra	brain
8	chr5:36590600-36592000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr5:36590600-36592000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:36590600-36592000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:36590600-36592000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr5:36590600-36592200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr5:36590800-36591400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr5:36590800-36591400	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr5:36590800-36591800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr5:36590800-36591800	Enhancers	Brain Cingulate Gyrus	brain
17	chr5:36590800-36591800	Enhancers	Brain Germinal Matrix	brain
18	chr5:36590800-36592000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr5:36590800-36592200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr5:36591000-36591400	Flanking Active TSS	Brain Hippocampus Middle	brain
21	chr5:36591000-36591600	Enhancers	Brain Angular Gyrus	brain
22	chr5:36591200-36591800	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr5:36591200-36591800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:36591200-36593400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:36591200-36606200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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