Variant report

Variant	rs13190952
Chromosome Location	chr6:143000774-143000775
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11155260	0.81[ASN][1000 genomes]
rs11155261	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11155262	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12197350	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13213654	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142995800-143001400	Weak transcription	Aorta	Aorta
2	chr6:142998200-143001600	Weak transcription	Fetal Brain Female	brain
3	chr6:142998200-143008200	Weak transcription	Fetal Stomach	stomach
4	chr6:142999200-143006000	Weak transcription	Fetal Lung	lung
5	chr6:142999400-143007800	Enhancers	Fetal Brain Male	brain
6	chr6:142999600-143001200	Enhancers	Primary T cells from cord blood	blood
7	chr6:143000000-143002400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr6:143000000-143002600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:143000200-143002600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:143000400-143001400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:143000600-143002400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:143000600-143002400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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