Variant report

Variant	rs13191209
Chromosome Location	chr6:13192816-13192817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:64636119..64638158-chr6:13191283..13192914,2	MCF-7	breast:
2	chr6:13192594..13195219-chr6:13328276..13330019,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145979	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10948504	0.82[EUR][1000 genomes]
rs1150595	0.88[EUR][1000 genomes]
rs1150598	0.90[EUR][1000 genomes]
rs1150600	0.84[EUR][1000 genomes]
rs12193156	0.90[EUR][1000 genomes]
rs12198274	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1223562	0.98[EUR][1000 genomes]
rs1223563	0.96[EUR][1000 genomes]
rs1232378	0.85[EUR][1000 genomes]
rs12526983	0.90[EUR][1000 genomes]
rs13200409	0.83[EUR][1000 genomes]
rs13206277	0.90[EUR][1000 genomes]
rs34624425	0.90[EUR][1000 genomes]
rs35207258	0.90[EUR][1000 genomes]
rs3916163	0.85[EUR][1000 genomes]
rs4711936	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4715138	0.83[EUR][1000 genomes]
rs4715139	0.84[EUR][1000 genomes]
rs4715145	0.91[EUR][1000 genomes]
rs4715146	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4715147	0.90[EUR][1000 genomes]
rs62385558	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv883450	chr6:13166341-13196011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv10481	chr6:13191100-13192936	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13178800-13217400	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:13182000-13205400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:13182000-13211800	Weak transcription	Fetal Brain Female	brain
4	chr6:13182000-13212000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:13182000-13230000	Weak transcription	Brain Angular Gyrus	brain
6	chr6:13183000-13195200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:13183000-13207000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:13184000-13220800	Weak transcription	Brain Germinal Matrix	brain
9	chr6:13184200-13197000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:13185000-13202800	Weak transcription	Brain Anterior Caudate	brain
11	chr6:13185200-13204000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:13185200-13205200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:13185400-13204800	Weak transcription	Lung	lung
14	chr6:13185400-13205800	Weak transcription	Aorta	Aorta
15	chr6:13185400-13205800	Weak transcription	Pancreas	Pancrea
16	chr6:13187400-13217400	Weak transcription	Right Atrium	heart
17	chr6:13189400-13196000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:13191000-13193000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:13191200-13204400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:13191400-13193400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:13191600-13193000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr6:13191600-13193400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr6:13191600-13193400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr6:13191600-13193400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:13191600-13193400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:13191600-13193600	Enhancers	H9 Cell Line	embryonic stem cell
27	chr6:13191600-13195400	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:13191800-13193200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr6:13191800-13210800	Weak transcription	Fetal Heart	heart
30	chr6:13192000-13197000	Weak transcription	Left Ventricle	heart
31	chr6:13192000-13205600	Weak transcription	Right Ventricle	heart
32	chr6:13192400-13193600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:13192400-13216800	Weak transcription	Fetal Intestine Small	intestine
34	chr6:13192600-13193200	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr6:13192800-13193200	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr6:13192800-13193400	Enhancers	Primary hematopoietic stem cells	blood

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