Variant report

Variant	rs13191523
Chromosome Location	chr6:31009094-31009095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:31007765..31010643-chr6:31011051..31014483,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10456390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757361	0.86[ASN][1000 genomes]
rs12191595	0.85[ASN][1000 genomes]
rs12193866	1.00[ASN][1000 genomes]
rs12196019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196237	0.93[ASN][1000 genomes]
rs12197587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202207	1.00[ASN][1000 genomes]
rs12207025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212799	0.93[ASN][1000 genomes]
rs12214258	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12215963	0.86[ASN][1000 genomes]
rs13201872	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13212987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17189812	0.93[ASN][1000 genomes]
rs17189826	1.00[ASN][1000 genomes]
rs3094086	0.86[ASN][1000 genomes]
rs3132580	0.86[ASN][1000 genomes]
rs3132581	0.86[ASN][1000 genomes]
rs41257954	0.86[ASN][1000 genomes]
rs55883436	0.87[ASN][1000 genomes]
rs73727119	0.86[ASN][1000 genomes]
rs73727120	0.86[ASN][1000 genomes]
rs73727123	0.86[ASN][1000 genomes]
rs73727137	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31004400-31010800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:31005800-31010800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:31005800-31010800	Weak transcription	Hela-S3	cervix
4	chr6:31005800-31011000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:31006000-31009200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:31006000-31010800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:31006000-31011000	Weak transcription	Brain Anterior Caudate	brain
8	chr6:31006000-31014800	Weak transcription	Right Atrium	heart
9	chr6:31006200-31010800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:31006200-31010800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:31006200-31010800	Weak transcription	NHDF-Ad	bronchial
12	chr6:31007800-31009400	Weak transcription	Stomach Mucosa	stomach
13	chr6:31008400-31009600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:31008600-31009200	Enhancers	Fetal Heart	heart
15	chr6:31008800-31009200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:31008800-31009400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:31009000-31009200	Bivalent Enhancer	Fetal Thymus	thymus
18	chr6:31009000-31009200	Enhancers	A549	lung
19	chr6:31009000-31009800	Enhancers	HepG2	liver
20	chr6:31009000-31011000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links