Variant report

Variant	rs13191650
Chromosome Location	chr6:149433017-149433018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10457842	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12216011	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1316534	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1316536	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2340800	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4454159	0.81[EUR][1000 genomes]
rs6570939	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740618	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7775412	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9498214	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149429200-149437200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:149430200-149434000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:149430200-149434000	Weak transcription	Ovary	ovary
4	chr6:149430200-149437200	Weak transcription	Brain Substantia Nigra	brain
5	chr6:149430600-149437200	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:149431600-149434400	Enhancers	Primary B cells from cord blood	blood
7	chr6:149431600-149434800	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:149432000-149434400	Flanking Active TSS	GM12878-XiMat	blood
9	chr6:149432000-149434600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:149432200-149433400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:149432600-149433200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:149432600-149433600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr6:149432800-149433800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:149432800-149434000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr6:149432800-149434000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:149432800-149436400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:149433000-149433200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:149433000-149433400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:149433000-149433800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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